Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120307.Seq
         (816 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55...    40   0.003
At5g48640.1 68418.m06015 cyclin family protein similar to SP|P55...    39   0.003
At2g19930.1 68415.m02329 RNA-dependent RNA polymerase family pro...    28   6.4  
At1g11720.1 68414.m01345 starch synthase, putative strong simila...    28   8.5  

>At5g48630.1 68418.m06014 cyclin family protein similar to SP|P55168
           Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 253

 Score = 39.5 bits (88), Expect = 0.003
 Identities = 19/53 (35%), Positives = 32/53 (60%)
 Frame = +2

Query: 5   IAIGALQIACVMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYEMWKSYDEKK 163
           I +  + IA V   KD +K WF EL+VDM+ ++ I   I++ YE  + + E++
Sbjct: 190 ITLACIYIASVHKEKD-IKTWFEELSVDMNIVKNIAMEILDFYENHRLFTEER 241


>At5g48640.1 68418.m06015 cyclin family protein similar to SP|P55168
           Cyclin C {Gallus gallus}; contains Pfam profile PF00134:
           Cyclin, N-terminal domain
          Length = 253

 Score = 39.1 bits (87), Expect = 0.003
 Identities = 20/63 (31%), Positives = 37/63 (58%)
 Frame = +2

Query: 2   QIAIGALQIACVMLGKDNLKPWFAELNVDMDKIQEIVRAIINLYEMWKSYDEKKEIQGLL 181
           +IA+  + IA V   KD +  WF +L+ DM+ ++ I   I++ YE +++  E+K +    
Sbjct: 189 RIALACIYIASVHREKD-ITAWFEDLHEDMNLVKNIAMEILDFYENYRTITEEK-VNSAF 246

Query: 182 SKM 190
           SK+
Sbjct: 247 SKL 249


>At2g19930.1 68415.m02329 RNA-dependent RNA polymerase family
           protein contains Pfam domain, PF05183: RNA dependent RNA
           polymerase
          Length = 977

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/41 (36%), Positives = 21/41 (51%)
 Frame = -1

Query: 300 GIKNEFFMSTIINYISLYKSILQNMSCYLWGAGFGLGILDN 178
           GI NEFF+  ++N +   KSI  N    L  A    G +D+
Sbjct: 516 GIPNEFFLDILLNTLEESKSIFYNKRAAL-NAALNYGEMDD 555


>At1g11720.1 68414.m01345 starch synthase, putative strong
           similarity to soluble-starch-synthase [Solanum
           tuberosum] GI:1911166
          Length = 1025

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +1

Query: 226 HIL*YGFI**YIIYNCRHEKFVFNSLGKEITIFDEVTYISSDF 354
           H   YG I   I++   + +F  N++GK +T  D+ T +S  +
Sbjct: 719 HYTQYGLIKTRIVFTIHNLEFGANAIGKAMTFADKATTVSPTY 761


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,197,423
Number of Sequences: 28952
Number of extensions: 318622
Number of successful extensions: 771
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1863090400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)