Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120306.Seq
(639 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0683 + 10363963-10364037,10364112-10364185,10364312-103644... 95 3e-20
05_03_0610 - 16167557-16167679,16168236-16168418,16169291-161694... 93 2e-19
02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679 46 2e-05
06_01_0983 - 7630651-7630683,7630717-7630942,7630993-7631234,763... 30 1.8
12_01_0191 + 1413287-1413346,1413504-1413632,1416819-1416998,141... 29 2.4
04_01_0483 + 6343599-6343778,6343886-6344011,6344096-6344173,634... 29 4.1
04_01_0480 + 6279576-6279755,6279863-6279988,6280074-6280151,628... 29 4.1
03_02_0488 - 8824980-8825267,8825364-8827775 29 4.1
04_01_0485 + 6389646-6389665,6390063-6390123,6390231-6390356,639... 28 7.2
11_01_0017 - 129261-129335,129352-129426,129565-129645,129929-13... 27 9.5
>03_02_0683 +
10363963-10364037,10364112-10364185,10364312-10364435,
10365047-10365229,10365478-10365600
Length = 192
Score = 95.5 bits (227), Expect = 3e-20
Identities = 50/95 (52%), Positives = 69/95 (72%), Gaps = 1/95 (1%)
Frame = +2
Query: 254 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 433
KKFSGK VV V R+I+ P + V +RPR+RTLT+V+D ILED+V+PAEIVGKRI
Sbjct: 86 KKFSGKDVVIVATRRIVRPPKKGSAV----QRPRTRTLTAVHDGILEDVVYPAEIVGKRI 141
Query: 434 RVKLDGSQLIKVHLDKNQQTTIEHKW-TPSSLYTR 535
R +LDG+++IK+ LD ++ E+K T S++Y R
Sbjct: 142 RYRLDGAKVIKIFLDPKERNNTEYKLETFSAVYRR 176
Score = 74.9 bits (176), Expect = 5e-14
Identities = 37/80 (46%), Positives = 57/80 (71%), Gaps = 2/80 (2%)
Frame = +3
Query: 24 KIIKASGAEADSFETSISQALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVP 197
KI K G E FE S++QA +LE N +LK++L++LYI A ++++ N+K+++I+VP
Sbjct: 7 KIQKEKGLEPSEFEDSVAQAFFDLENGNQELKSELKDLYINNAVQMDIAGNRKAVVIHVP 66
Query: 198 MPKLKAFQKIQIRLVRELER 257
KAF+KI +RLVRELE+
Sbjct: 67 YRLRKAFKKIHVRLVRELEK 86
Score = 31.9 bits (69), Expect = 0.44
Identities = 10/21 (47%), Positives = 18/21 (85%)
Frame = +1
Query: 508 MDTFQSVYKKLTGREVTFEFP 570
++TF +VY++L G++V FE+P
Sbjct: 167 LETFSAVYRRLCGKDVAFEYP 187
>05_03_0610 -
16167557-16167679,16168236-16168418,16169291-16169414,
16169514-16169626,16169668-16169742
Length = 205
Score = 93.1 bits (221), Expect = 2e-19
Identities = 49/95 (51%), Positives = 66/95 (69%), Gaps = 1/95 (1%)
Frame = +2
Query: 254 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVGKRI 433
KKFSGK VV V R+I+ P + V RPR+RTLT+V+D ILED+V+PAEIVGKR+
Sbjct: 99 KKFSGKDVVLVATRRIVRPPKKGSAVV----RPRTRTLTAVHDGILEDVVYPAEIVGKRV 154
Query: 434 RVKLDGSQLIKVHLDKNQQTTIEHKW-TPSSLYTR 535
R LDG +++K+ LD ++ E+K T SS+Y R
Sbjct: 155 RYHLDGRKIMKIFLDPKERNNTEYKLDTFSSVYRR 189
Score = 60.5 bits (140), Expect = 1e-09
Identities = 31/62 (50%), Positives = 46/62 (74%), Gaps = 2/62 (3%)
Frame = +3
Query: 78 QALVELET-NSDLKAQLRELYITKAKEIELH-NKKSIIIYVPMPKLKAFQKIQIRLVREL 251
QA +LE N +LK+ L++LYI A +++L N+K++IIYVP KA++KI +RLVREL
Sbjct: 38 QAFFDLENGNQELKSDLKDLYINGAVQMDLPGNRKAVIIYVPYRLRKAYKKIHVRLVREL 97
Query: 252 ER 257
E+
Sbjct: 98 EK 99
Score = 33.5 bits (73), Expect = 0.14
Identities = 11/21 (52%), Positives = 18/21 (85%)
Frame = +1
Query: 508 MDTFQSVYKKLTGREVTFEFP 570
+DTF SVY++L G++V F++P
Sbjct: 180 LDTFSSVYRRLCGKDVVFDYP 200
>02_02_0695 - 13024639-13024800,13025425-13025607,13025635-13025679
Length = 129
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/57 (45%), Positives = 37/57 (64%)
Frame = +2
Query: 254 KKFSGKHVVFVGDRKILPKPSHKTRVANKQKRPRSRTLTSVYDAILEDLVFPAEIVG 424
KKFSGK VVF R+I+ +P +K + PR+RTL +V+D ILED+V ++G
Sbjct: 71 KKFSGKDVVFDATRRIV-RPLNKGSAVH---HPRTRTLITVHDGILEDVVSQLRLLG 123
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/42 (38%), Positives = 27/42 (64%)
Frame = +3
Query: 132 LYITKAKEIELHNKKSIIIYVPMPKLKAFQKIQIRLVRELER 257
+Y+ ++ N K ++I+V KAF+KI +RLV+ELE+
Sbjct: 31 MYVCSQMDVAA-NWKVVVIHVLYHLCKAFKKIHVRLVKELEK 71
>06_01_0983 -
7630651-7630683,7630717-7630942,7630993-7631234,
7631502-7631591,7631680-7631845,7632225-7633191,
7633402-7633591,7633908-7634048,7634416-7634736
Length = 791
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +2
Query: 401 VFPAEIVGKRIRVKLDGSQLIKVHLDKNQQTTIEHK 508
+FPA I G + KLD ++L K H D+ + ++HK
Sbjct: 589 IFPARIGGYLLDSKLDRNEL-KKHFDQTRANRLDHK 623
>12_01_0191 +
1413287-1413346,1413504-1413632,1416819-1416998,
1417747-1417938,1418533-1418673,1418785-1418912,
1419088-1419262,1419664-1419852,1420628-1420749,
1420829-1420874
Length = 453
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/39 (38%), Positives = 25/39 (64%)
Frame = +2
Query: 350 PRSRTLTSVYDAILEDLVFPAEIVGKRIRVKLDGSQLIK 466
P +RTLT+ +D IL+D + A+I GK + + + +IK
Sbjct: 86 PNTRTLTNAHDGILDD-INCAQIAGKHVGDHSNCANVIK 123
>04_01_0483 +
6343599-6343778,6343886-6344011,6344096-6344173,
6344859-6344984,6345253-6345354,6345425-6345571,
6345861-6345984,6346992-6347152
Length = 347
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/45 (22%), Positives = 23/45 (51%)
Frame = +3
Query: 84 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 218
LVE+ D ++ + Y+ + L++K +++Y+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPHRVRLYSKDDVLLYIKEMKISGF 157
>04_01_0480 +
6279576-6279755,6279863-6279988,6280074-6280151,
6280847-6280972,6281244-6281345,6281416-6281490,
6281852-6281975,6283005-6283107,6283546-6283617,
6283662-6283788,6284125-6284180,6284438-6284453
Length = 394
Score = 28.7 bits (61), Expect = 4.1
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +3
Query: 84 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 218
LVE+ D ++ + Y+ + L +K ++IY+ K+ F
Sbjct: 113 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLIYIKEMKISGF 157
>03_02_0488 - 8824980-8825267,8825364-8827775
Length = 899
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/66 (27%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Frame = +3
Query: 33 KASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIY-VPMPKL 209
++SG + FET +S A++E+E N+ L + +K+I H++ I Y P+P +
Sbjct: 305 QSSGVTGEVFETLVSSAVMEMERNASLSP------VGFSKDIGQHHEFPRIPYSCPLPIM 358
Query: 210 KAFQKI 227
+ +++
Sbjct: 359 DSSEEL 364
>04_01_0485 +
6389646-6389665,6390063-6390123,6390231-6390356,
6390441-6390518,6391304-6391429,6391630-6391731,
6391802-6391948,6392237-6392360,6393608-6393737,
6393908-6394130
Length = 378
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/45 (22%), Positives = 22/45 (48%)
Frame = +3
Query: 84 LVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMPKLKAF 218
LVE+ D ++ + Y+ + L +K +++Y+ K+ F
Sbjct: 80 LVEIRAGGDNMDKMYKFYVYPPNRVRLFSKDDVLLYIKEMKISGF 124
>11_01_0017 -
129261-129335,129352-129426,129565-129645,129929-130040,
130131-131177,131256-131347,131773-131943,132150-132253,
132367-132501,132583-132724,132803-133059,133126-133337,
133417-133454
Length = 846
Score = 27.5 bits (58), Expect = 9.5
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 183 IIYVPMPKLKAFQKIQIRLVRELERS-SVVNM*SLLETVRSCLSPATKPVLLTNKRGH 353
I+ +P+P +IQ R+ ++ E S SVV+ +V + P T+P +T++R H
Sbjct: 212 IMPLPVPNSSGTAQIQ-RIPKKSEPSPSVVSRSRSTSSVTNVPKPTTRPATVTSERTH 268
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,726,148
Number of Sequences: 37544
Number of extensions: 320719
Number of successful extensions: 808
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 780
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 805
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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