Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120306.Seq
         (639 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical pr...   111   5e-25
U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical pr...    28   4.9  
Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical pr...    27   8.6  
AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical...    27   8.6  

>Z75714-1|CAB00058.1|  194|Caenorhabditis elegans Hypothetical
           protein ZC434.2 protein.
          Length = 194

 Score =  111 bits (266), Expect = 5e-25
 Identities = 50/86 (58%), Positives = 68/86 (79%), Gaps = 1/86 (1%)
 Frame = +2

Query: 254 KKFSGKHVVFVGDRKILPKPSHKTRVA-NKQKRPRSRTLTSVYDAILEDLVFPAEIVGKR 430
           KKF G+ ++ +  R+ILPKP   ++    KQKRPRSRTLT+V+DA L++LV+PAE+VG+R
Sbjct: 84  KKFGGRDILILAKRRILPKPQRGSKARPQKQKRPRSRTLTAVHDAWLDELVYPAEVVGRR 143

Query: 431 IRVKLDGSQLIKVHLDKNQQTTIEHK 508
           IRVKLDG ++ KVHLDK+ QT + HK
Sbjct: 144 IRVKLDGKKVYKVHLDKSHQTNVGHK 169



 Score = 96.3 bits (229), Expect = 2e-20
 Identities = 44/78 (56%), Positives = 59/78 (75%)
 Frame = +3

Query: 24  KIIKASGAEADSFETSISQALVELETNSDLKAQLRELYITKAKEIELHNKKSIIIYVPMP 203
           K++K+ G      E  +SQAL++LETN D+++QL+ELYI   KE+EL NK +IIIYVP+P
Sbjct: 7   KLLKSDGKVVSEIEKQVSQALIDLETNDDVQSQLKELYIVGVKEVELGNKSAIIIYVPVP 66

Query: 204 KLKAFQKIQIRLVRELER 257
           +LKAF KI   LVRELE+
Sbjct: 67  QLKAFHKIHPALVRELEK 84



 Score = 39.5 bits (88), Expect = 0.002
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +1

Query: 517 FQSVYKKLTGREVTFEFPEP 576
           F SVY+KLTG++VTFEFP+P
Sbjct: 173 FASVYRKLTGKDVTFEFPDP 192


>U23486-3|AAL38955.1|  529|Caenorhabditis elegans Hypothetical
           protein F07F6.4 protein.
          Length = 529

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 22/60 (36%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = +1

Query: 88  SNSKPTPTSKPNFGSFTLQKLKKLNYTIRSRSSSMCRCLN*RPFRRSRSGLS-VSSKEVQ 264
           S+SK T      F SF  Q ++K  YT  S SSS  R     P  R  +G S +S  ++Q
Sbjct: 376 SSSKKTTKEDDFFDSFETQPVQKSRYTASSSSSSTSRA----PTTRLTAGASPISDVDLQ 431


>U23179-7|AAC46721.1|  782|Caenorhabditis elegans Hypothetical
           protein C27D6.1 protein.
          Length = 782

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 19/61 (31%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
 Frame = +3

Query: 9   VKMSTKIIKASGAEADSFE---TSISQALVELETNSDLKAQLRELYITKAKEIELHNKKS 179
           +K + K  K   AEA+ ++   T  S+ L ELE       Q +E +  K++E+E+ NK+ 
Sbjct: 242 LKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEIQNKQL 301

Query: 180 I 182
           +
Sbjct: 302 V 302


>Z78420-2|CAB01710.3|  738|Caenorhabditis elegans Hypothetical
           protein F45H11.3 protein.
          Length = 738

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 15/29 (51%), Positives = 18/29 (62%)
 Frame = -2

Query: 110 VGVGFEFDQRLRDRGLEGIRLSTARFDDL 24
           V VGFE   RLRD+GL   +LS   +D L
Sbjct: 522 VEVGFENWIRLRDKGLSHSQLSCQLYDTL 550


>AC087079-12|AAK27874.2|  472|Caenorhabditis elegans Hypothetical
           protein Y37E3.13 protein.
          Length = 472

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
 Frame = -1

Query: 519 EGVHL-CSIVVCWFLSKCTLMSCEPSNLTLMRLPTISAGKTKSSRIASYTEVNVLE 355
           EG+ + C   +C F+  C ++SC      ++R      GKT+ +R   Y    VLE
Sbjct: 328 EGIMIYCQFTICTFIGVCCVISC-----CVLRTGGGGRGKTRPNR--EYLHTKVLE 376


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,382,464
Number of Sequences: 27780
Number of extensions: 271218
Number of successful extensions: 745
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)