Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120305.Seq
         (722 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          23   3.3  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    23   3.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   4.4  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    22   4.4  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    22   5.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    21   7.6  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +3

Query: 312 HLRSGRGCPDCWCPPGASQLPPLQRV 389
           HLR GRG    + P  ++ +P  + V
Sbjct: 192 HLRKGRGAIGAYGPEKSASIPKKKEV 217


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 30  VCAKVVSWSECVQIVITVFG 89
           VCA +   SECV +  ++FG
Sbjct: 194 VCADLCLLSECVDLFNSLFG 213


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = -1

Query: 104 GVFTGPKNCDDY 69
           G+F+ PKNC  Y
Sbjct: 564 GIFSDPKNCAAY 575


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -2

Query: 442 NRQPDQRILQPNQHPSG*TLCKGGSWLAP 356
           N  PD   ++P    S  TLC G   ++P
Sbjct: 285 NGSPDVIKVEPELSDSEKTLCNGSKGISP 313


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.8 bits (44), Expect = 5.8
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = -3

Query: 714 APKPYARWTRYRRRPSLCASSDSDNEHRGS 625
           AP+  +R T+     S  +S+D D+E R S
Sbjct: 122 APRTASRETKSSESDSGASSADPDDELRSS 151


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
            variant 2 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 678  RRPSLCASSDSDNEHRGS 625
            RR S+ ASS  D+ H G+
Sbjct: 1163 RRRSMSASSRGDHHHLGA 1180


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
            variant 1 protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 678  RRPSLCASSDSDNEHRGS 625
            RR S+ ASS  D+ H G+
Sbjct: 1163 RRRSMSASSRGDHHHLGA 1180


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase CHS1B
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 678  RRPSLCASSDSDNEHRGS 625
            RR S+ ASS  D+ H G+
Sbjct: 1163 RRRSMSASSRGDHHHLGA 1180


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase CHS1A
            protein.
          Length = 1558

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -3

Query: 678  RRPSLCASSDSDNEHRGS 625
            RR S+ ASS  D+ H G+
Sbjct: 1163 RRRSMSASSRGDHHHLGA 1180


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,026
Number of Sequences: 336
Number of extensions: 4556
Number of successful extensions: 18
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19259425
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)