Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120305.Seq
(722 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.) 130 1e-30
SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.72
SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.95
SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8) 31 1.2
SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041) 30 1.7
SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9) 30 2.2
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6) 29 2.9
SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69) 29 2.9
SB_33125| Best HMM Match : Pkinase (HMM E-Value=0) 29 3.8
SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.8
SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069) 29 5.0
SB_38437| Best HMM Match : VWA (HMM E-Value=0) 29 5.0
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_59186| Best HMM Match : rve (HMM E-Value=0.00029) 28 6.7
SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26) 28 6.7
SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13) 28 6.7
SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14) 28 6.7
SB_1237| Best HMM Match : rve (HMM E-Value=0.00029) 28 6.7
SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.8
>SB_29190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 156
Score = 130 bits (314), Expect = 1e-30
Identities = 66/81 (81%), Positives = 72/81 (88%)
Frame = +1
Query: 256 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLA 435
RPELIMKSIIPVVMAGIIAIYGLVVAVLI ++ + +Y LYK F+ LGAGL+VG SGLA
Sbjct: 47 RPELIMKSIIPVVMAGIIAIYGLVVAVLIGSSISK--DYTLYKSFLDLGAGLSVGLSGLA 104
Query: 436 AGFAIGIVGDAGVRGTAQQPR 498
AGFAIGIVGDAGVRGTAQQPR
Sbjct: 105 AGFAIGIVGDAGVRGTAQQPR 125
Score = 65.3 bits (152), Expect = 5e-11
Identities = 30/39 (76%), Positives = 34/39 (87%)
Frame = +2
Query: 131 NNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 247
+ P Y FFGVMGA +A++FSALGAAYGTAKSGTGIAAM
Sbjct: 5 DQPSYVAFFGVMGATAAMVFSALGAAYGTAKSGTGIAAM 43
Score = 41.1 bits (92), Expect = 9e-04
Identities = 20/22 (90%), Positives = 21/22 (95%)
Frame = +3
Query: 510 MILILIFAEVLGLYGLIVAIYL 575
MILILIFAEVLGLYGLIVA+ L
Sbjct: 130 MILILIFAEVLGLYGLIVALIL 151
>SB_912| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 116
Score = 31.5 bits (68), Expect = 0.72
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 400 GAGLAVGFSGLAAGFAIGIVG 462
GAG+ VGF LA G +G+VG
Sbjct: 46 GAGMTVGFCNLACGICVGLVG 66
>SB_7591| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3261
Score = 31.1 bits (67), Expect = 0.95
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 282 HSCRHGGYYCHLRSGRGCPDCWCPPGASQLPPLQRV 389
+ CR+ G C + R P C CPPG QRV
Sbjct: 2981 YKCRYQGEVC-VTDSRNVPRCVCPPGCPPAEVSQRV 3015
>SB_45600| Best HMM Match : LTXXQ (HMM E-Value=1.8)
Length = 355
Score = 30.7 bits (66), Expect = 1.2
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
Frame = -1
Query: 515 NHSTNNLGC*AVPRTPASPTMPMAKPA--ARPENPTAKPAPKWMNPL*RG*LAGSWRAPA 342
N+ +NN G A P TPA+ +P+A P+ A P T PAP + P A + +
Sbjct: 217 NNFSNNFGTPATPATPAN-GVPIAGPSGMATPGAFTPPPAPVFTPPPPYRTTAKPFPKMS 275
Query: 341 IRTATTRP*MAIIPAMTTGMIDFMISS 261
+ +P + P +T ++ ++ S
Sbjct: 276 LTPTPKKPPVPKKPVLTPAQLEGLLKS 302
>SB_34751| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1143
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 447 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 316
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 713 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQPIKQHQDKHNQTL 756
Score = 29.9 bits (64), Expect = 2.2
Identities = 16/44 (36%), Positives = 23/44 (52%)
Frame = -3
Query: 447 GETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTV 316
G+ +T SYS S+QV +PF V +QD H+QT+
Sbjct: 44 GDVQKETTGSYSCNSSQVFDPFTLQCVNLPQLIKQHQDKHNQTL 87
>SB_56471| Best HMM Match : RVT_1 (HMM E-Value=0.00041)
Length = 1155
Score = 30.3 bits (65), Expect = 1.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = -1
Query: 473 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 381
TPA PT+PMA A + P+ PA PL
Sbjct: 1095 TPALPTIPMAPSGAPAKTPSVAPAAPSPRPL 1125
>SB_38055| Best HMM Match : zf-CW (HMM E-Value=1.9)
Length = 439
Score = 29.9 bits (64), Expect = 2.2
Identities = 18/59 (30%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Frame = -2
Query: 481 YHARLHLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPGGHQQSGQ--PRPDRRW 311
YHA+ + +C ++P +L Q S C PGGHQ Q R RW
Sbjct: 264 YHAKNQVVKCYQPGKEPGGHLLPTYQAKSQAVKCYYIPGKEPGGHQAKNQAVTRQRTRW 322
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -2
Query: 466 HLPRCLWRNRQPDQRILQPNQHPSG*TLCKGGSWLAPG-GHQQSGQ 332
++ +++ Q +Q +L NQ PS T+ GGS G GH GQ
Sbjct: 2347 YVSHTVFKREQDEQLLLWLNQRPSDWTMTWGGSGTIYGWGHNHRGQ 2392
>SB_53929| Best HMM Match : Amelogenin (HMM E-Value=3.6)
Length = 156
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 470 PASPTMPMAKPAARPENPTAKPAPK 396
PA+P P A PAA P PTA PA +
Sbjct: 52 PAAPVTPTAAPAA-PVTPTAAPAAR 75
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 470 PASPTMPMAKPAARPENPTAKPA 402
PA+P P A PAAR PTA PA
Sbjct: 62 PAAPVTPTAAPAAR-VTPTAAPA 83
>SB_44788| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 979
Score = 29.5 bits (63), Expect = 2.9
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +3
Query: 282 HSCRHGGYYCHLRSGRGCPDCW 347
+SC G YYC++ RG DCW
Sbjct: 348 YSCNSGHYYCYV---RGSNDCW 366
>SB_16587| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.69)
Length = 404
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = -1
Query: 470 PASPTMPMAKPAARPENPTAKPAPK 396
PA+P P A PAA P PTA PA +
Sbjct: 209 PAAPVTPTAAPAA-PVTPTAAPAAR 232
Score = 28.3 bits (60), Expect = 6.7
Identities = 14/23 (60%), Positives = 15/23 (65%)
Frame = -1
Query: 470 PASPTMPMAKPAARPENPTAKPA 402
PA+P P A PAAR PTA PA
Sbjct: 219 PAAPVTPTAAPAAR-VTPTAAPA 240
>SB_33125| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 937
Score = 29.1 bits (62), Expect = 3.8
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Frame = -1
Query: 575 QVDGDDKSVKTQYFSENKNKNHSTNN---LG---C*AV---PRT-PASPTMPMAKPAARP 426
Q+DG D S+ +++ NH N +G C + P T P + T A+P ARP
Sbjct: 537 QIDGKDASLLICHYTHFTLNNHLKLNALIIGLHRCNSAHVSPVTEPGTSTEGPARPPARP 596
Query: 425 ENPTAKPAPKWMNP 384
PTAKPA ++P
Sbjct: 597 P-PTAKPAVNRLSP 609
>SB_4395| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 74
Score = 29.1 bits (62), Expect = 3.8
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -1
Query: 644 IMSIEARSTGDGSGVCSGRLFCVQVDGDDKSVKTQYFSENKNKN 513
+ ++ +STGD S VC G +F D K + Q E K N
Sbjct: 15 LSALNKKSTGDKSWVCFGNMFMKLPDSKTKDMIIQGLQEVKGFN 58
>SB_51309| Best HMM Match : LicD (HMM E-Value=0.0069)
Length = 466
Score = 28.7 bits (61), Expect = 5.0
Identities = 17/28 (60%), Positives = 18/28 (64%)
Frame = +3
Query: 135 IQSTDPSLELWGRRLLSSSAPWELPMEL 218
I S D LELWG R LS+SA LP EL
Sbjct: 355 ILSGDFYLELWGARELSNSALNFLPAEL 382
>SB_38437| Best HMM Match : VWA (HMM E-Value=0)
Length = 3445
Score = 28.7 bits (61), Expect = 5.0
Identities = 24/76 (31%), Positives = 30/76 (39%)
Frame = -1
Query: 626 RSTGDGSGVCSGRLFCVQVDGDDKSVKTQYFSENKNKNHSTNNLGC*AVPRTPASPTMPM 447
R G G G R ++ D + + T F + N C V TP PT
Sbjct: 1376 RVYGVGVGRAFSRAQLRRISTDRRHMFTVGFKALRRLVGVMKNRLCREVRPTPTKPTKRP 1435
Query: 446 AKPAARPENPTAKPAP 399
+P RP PT KPAP
Sbjct: 1436 TRP-TRPPKPT-KPAP 1449
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/34 (38%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = -1
Query: 482 VPRTPAS-PTMPMAKPAARPENPTAKPAPKWMNP 384
+P TP P P P RP PT +P P P
Sbjct: 1354 IPSTPRPRPPTPPRPPTPRPRPPTPRPGPPTPRP 1387
>SB_59186| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 346
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 473 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 381
TPA PT+P A A + P+ PA PL
Sbjct: 286 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 316
>SB_22898| Best HMM Match : WD40 (HMM E-Value=5.9e-26)
Length = 490
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Frame = +1
Query: 235 YCRHVGERPELIMKSIIPVVMAGIIAIYGLVVAVLI 342
+C H GE + + S++P V+ G ++ LV VLI
Sbjct: 379 WCGHKGEILDFTLSSLVPGVLTG-FPVFSLVPGVLI 413
>SB_8467| Best HMM Match : rve (HMM E-Value=2.4e-13)
Length = 347
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 473 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 381
TPA PT+P A A + P+ PA PL
Sbjct: 290 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 320
>SB_5993| Best HMM Match : EGF_2 (HMM E-Value=9e-14)
Length = 360
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 216 LPSQELVLPPCR*EA*ADHEV--DHSCRHGGYYCHLRSGRGCPDCWCPPG 359
LPS LP C + +H + + C YCH ++GR C C PG
Sbjct: 250 LPSHGFPLPMC---SPGNHGIQCNSKCTCASVYCHAQTGR----CMCSPG 292
>SB_1237| Best HMM Match : rve (HMM E-Value=0.00029)
Length = 1026
Score = 28.3 bits (60), Expect = 6.7
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -1
Query: 473 TPASPTMPMAKPAARPENPTAKPAPKWMNPL 381
TPA PT+P A A + P+ PA PL
Sbjct: 966 TPALPTIPQAPSGAPAKTPSVAPAAPSPRPL 996
>SB_22642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1574
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Frame = -3
Query: 612 REWCVF---RAFILCTGRWRR*VRKDP 541
R WCV+ R+ I CT RW R V P
Sbjct: 931 RGWCVYHMGRSLIACTRRWMRKVACSP 957
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,208,251
Number of Sequences: 59808
Number of extensions: 574296
Number of successful extensions: 2168
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 1773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2146
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1925890720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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