Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120305.Seq
(722 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical pr... 118 6e-27
AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h at... 118 6e-27
AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein ... 118 6e-27
AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein. 118 6e-27
Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical pr... 103 1e-22
AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein. 103 1e-22
Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical pr... 45 6e-05
AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein. 45 6e-05
AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density l... 33 0.16
AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical ... 32 0.36
AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical ... 32 0.36
AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine... 31 0.63
U41546-5|AAC48222.2| 1022|Caenorhabditis elegans Sodium:neurotra... 30 1.9
Z81481-4|CAB03950.1| 345|Caenorhabditis elegans Hypothetical pr... 29 2.5
Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical pr... 29 2.5
AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical ... 29 2.5
Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical p... 29 4.4
Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical pr... 29 4.4
Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical pr... 29 4.4
U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related... 29 4.4
AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical ... 29 4.4
AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha... 29 4.4
AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical... 28 5.9
AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA topoisome... 28 5.9
AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm rec... 28 5.9
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr... 28 7.8
Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical pr... 28 7.8
D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein. 28 7.8
AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain (... 28 7.8
AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain (... 28 7.8
AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain (... 28 7.8
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 28 7.8
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 28 7.8
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 28 7.8
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 28 7.8
>Z29095-3|CAA82355.1| 161|Caenorhabditis elegans Hypothetical
protein R10E11.2 protein.
Length = 161
Score = 118 bits (283), Expect = 6e-27
Identities = 58/82 (70%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGL 432
RPELIMKS+IPV+MAGII IYGLVVA+++ G + A Y L KGF HL AGL G GL
Sbjct: 51 RPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGL 110
Query: 433 AAGFAIGIVGDAGVRGTAQQPR 498
AG+AIGIVGDAGVRGTAQQPR
Sbjct: 111 GAGYAIGIVGDAGVRGTAQQPR 132
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = +2
Query: 143 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 247
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSM 47
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = +3
Query: 510 MILILIFAEVLGLYGLIVAIYL 575
MILILIF+EVLGLYG+IVA+ L
Sbjct: 137 MILILIFSEVLGLYGMIVALIL 158
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +3
Query: 498 VIRRMILILIFAEVLGLYGLIVAIYL 575
+I + ++ +I A ++G+YGL+VA+ L
Sbjct: 54 LIMKSVIPVIMAGIIGIYGLVVAMVL 79
>AC024762-4|AAF59473.1| 161|Caenorhabditis elegans Vacuolar h
atpase protein 3 protein.
Length = 161
Score = 118 bits (283), Expect = 6e-27
Identities = 58/82 (70%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGL 432
RPELIMKS+IPV+MAGII IYGLVVA+++ G + A Y L KGF HL AGL G GL
Sbjct: 51 RPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGL 110
Query: 433 AAGFAIGIVGDAGVRGTAQQPR 498
AG+AIGIVGDAGVRGTAQQPR
Sbjct: 111 GAGYAIGIVGDAGVRGTAQQPR 132
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = +2
Query: 143 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 247
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSM 47
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = +3
Query: 510 MILILIFAEVLGLYGLIVAIYL 575
MILILIF+EVLGLYG+IVA+ L
Sbjct: 137 MILILIFSEVLGLYGMIVALIL 158
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +3
Query: 498 VIRRMILILIFAEVLGLYGLIVAIYL 575
+I + ++ +I A ++G+YGL+VA+ L
Sbjct: 54 LIMKSVIPVIMAGIIGIYGLVVAMVL 79
>AB009566-1|BAA75066.1| 161|Caenorhabditis elegans Vha3 protein
protein.
Length = 161
Score = 118 bits (283), Expect = 6e-27
Identities = 58/82 (70%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGL 432
RPELIMKS+IPV+MAGII IYGLVVA+++ G + A Y L KGF HL AGL G GL
Sbjct: 51 RPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGL 110
Query: 433 AAGFAIGIVGDAGVRGTAQQPR 498
AG+AIGIVGDAGVRGTAQQPR
Sbjct: 111 GAGYAIGIVGDAGVRGTAQQPR 132
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = +2
Query: 143 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 247
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSM 47
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = +3
Query: 510 MILILIFAEVLGLYGLIVAIYL 575
MILILIF+EVLGLYG+IVA+ L
Sbjct: 137 MILILIFSEVLGLYGMIVALIL 158
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +3
Query: 498 VIRRMILILIFAEVLGLYGLIVAIYL 575
+I + ++ +I A ++G+YGL+VA+ L
Sbjct: 54 LIMKSVIPVIMAGIIGIYGLVVAMVL 79
>AB000918-1|BAA22596.1| 161|Caenorhabditis elegans VHA-2 protein.
Length = 161
Score = 118 bits (283), Expect = 6e-27
Identities = 58/82 (70%), Positives = 65/82 (79%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGL 432
RPELIMKS+IPV+MAGII IYGLVVA+++ G + A Y L KGF HL AGL G GL
Sbjct: 51 RPELIMKSVIPVIMAGIIGIYGLVVAMVLKGKVTSASAGYDLNKGFAHLAAGLTCGLCGL 110
Query: 433 AAGFAIGIVGDAGVRGTAQQPR 498
AG+AIGIVGDAGVRGTAQQPR
Sbjct: 111 GAGYAIGIVGDAGVRGTAQQPR 132
Score = 56.8 bits (131), Expect = 1e-08
Identities = 26/35 (74%), Positives = 28/35 (80%)
Frame = +2
Query: 143 YGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 247
Y PFFG MGAASA IF+ LGAAYGTAKS GI +M
Sbjct: 13 YAPFFGYMGAASAQIFTVLGAAYGTAKSAVGICSM 47
Score = 39.1 bits (87), Expect = 0.003
Identities = 18/22 (81%), Positives = 21/22 (95%)
Frame = +3
Query: 510 MILILIFAEVLGLYGLIVAIYL 575
MILILIF+EVLGLYG+IVA+ L
Sbjct: 137 MILILIFSEVLGLYGMIVALIL 158
Score = 27.9 bits (59), Expect = 7.8
Identities = 10/26 (38%), Positives = 20/26 (76%)
Frame = +3
Query: 498 VIRRMILILIFAEVLGLYGLIVAIYL 575
+I + ++ +I A ++G+YGL+VA+ L
Sbjct: 54 LIMKSVIPVIMAGIIGIYGLVVAMVL 79
>Z29095-6|CAA82354.1| 169|Caenorhabditis elegans Hypothetical
protein R10E11.8 protein.
Length = 169
Score = 103 bits (247), Expect = 1e-22
Identities = 49/82 (59%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGL 432
RP+L+MK+IIPVVMAGI+AIYGLVVAV+++G ++ ANY + F GL G GL
Sbjct: 59 RPDLVMKAIIPVVMAGIVAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGL 118
Query: 433 AAGFAIGIVGDAGVRGTAQQPR 498
AG+AIGI GDAGVR +QQPR
Sbjct: 119 GAGYAIGIAGDAGVRALSQQPR 140
Score = 57.6 bits (133), Expect = 8e-09
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +2
Query: 140 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 247
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASM 55
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +3
Query: 510 MILILIFAEVLGLYGLIVAIYL 575
MILILIFAEVLGLYG+IVA+ L
Sbjct: 145 MILILIFAEVLGLYGMIVALIL 166
>AB000917-1|BAA22595.1| 169|Caenorhabditis elegans VHA-1 protein.
Length = 169
Score = 103 bits (247), Expect = 1e-22
Identities = 49/82 (59%), Positives = 61/82 (74%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEP-ANYPLYKGFIHLGAGLAVGFSGL 432
RP+L+MK+IIPVVMAGI+AIYGLVVAV+++G ++ ANY + F GL G GL
Sbjct: 59 RPDLVMKAIIPVVMAGIVAIYGLVVAVIVSGKVEPAGANYTINNAFSQFAGGLVCGLCGL 118
Query: 433 AAGFAIGIVGDAGVRGTAQQPR 498
AG+AIGI GDAGVR +QQPR
Sbjct: 119 GAGYAIGIAGDAGVRALSQQPR 140
Score = 57.6 bits (133), Expect = 8e-09
Identities = 24/36 (66%), Positives = 31/36 (86%)
Frame = +2
Query: 140 IYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 247
+YGPFFG +G SA+ F+A G+AYGTAK+GTGIA+M
Sbjct: 20 MYGPFFGSLGVTSAMAFAAAGSAYGTAKAGTGIASM 55
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/22 (86%), Positives = 21/22 (95%)
Frame = +3
Query: 510 MILILIFAEVLGLYGLIVAIYL 575
MILILIFAEVLGLYG+IVA+ L
Sbjct: 145 MILILIFAEVLGLYGMIVALIL 166
>Z68317-1|CAA92686.1| 214|Caenorhabditis elegans Hypothetical
protein T01H3.1 protein.
Length = 214
Score = 44.8 bits (101), Expect = 6e-05
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Frame = +1
Query: 259 PELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQE--PANYP------------LYKGFIH 396
P + K+++ ++ +AI+G+++A + G L E + P L G++
Sbjct: 86 PRIRTKNLVSIIFCEAVAIFGIIMAFVFVGKLAEFRREDLPDTEDGMAILARNLASGYMI 145
Query: 397 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 495
G GL VG S L G A+GIVG A P
Sbjct: 146 FGGGLTVGLSNLVCGLAVGIVGSGAAIADAANP 178
>AB000919-1|BAA22597.1| 214|Caenorhabditis elegans VHA-4 protein.
Length = 214
Score = 44.8 bits (101), Expect = 6e-05
Identities = 27/93 (29%), Positives = 43/93 (46%), Gaps = 14/93 (15%)
Frame = +1
Query: 259 PELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQE--PANYP------------LYKGFIH 396
P + K+++ ++ +AI+G+++A + G L E + P L G++
Sbjct: 86 PRIRTKNLVSIIFCEAVAIFGIIMAFVFVGKLAEFRREDLPDTEDGMAILARNLASGYMI 145
Query: 397 LGAGLAVGFSGLAAGFAIGIVGDAGVRGTAQQP 495
G GL VG S L G A+GIVG A P
Sbjct: 146 FGGGLTVGLSNLVCGLAVGIVGSGAAIADAANP 178
>AF003133-3|AAB54138.2| 2192|Caenorhabditis elegans Low-density
lipoprotein receptorrelated protein 2 protein.
Length = 2192
Score = 33.5 bits (73), Expect = 0.16
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 276 VDHSCRHGGYYCHLRSGRGCPDCWCPPG 359
V H C +GG+ + S R P C CP G
Sbjct: 1800 VGHECLNGGFCSYANSNRSLPHCICPSG 1827
>AC006689-3|AAO21400.1| 310|Caenorhabditis elegans Hypothetical
protein T22E7.1b protein.
Length = 310
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 375 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 277
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AC006689-2|AAF39970.2| 341|Caenorhabditis elegans Hypothetical
protein T22E7.1a protein.
Length = 341
Score = 32.3 bits (70), Expect = 0.36
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -3
Query: 375 GVVGWLLEGTSNQDSHDQTVDGNNTRHDDRNDR 277
GVVG +G+ D H+ T G N+ HD + D+
Sbjct: 12 GVVGAYAQGSCRTDQHEMTCRGKNSLHDLKKDQ 44
>AF022973-5|AAC25797.4| 479|Caenorhabditis elegans Acetylcholine
receptor protein 15 protein.
Length = 479
Score = 31.5 bits (68), Expect = 0.63
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 7/66 (10%)
Frame = +3
Query: 54 SECVQIVITVFGTCKYSHI*QTKWLKIIQS-------TDPSLELWGRRLLSSSAPWELPM 212
SE V ++ F TC + + T + +QS ++ W R +L +PW L M
Sbjct: 283 SEAVPLLGVFFHTCNFISVLATSFTVYVQSFHFRNQHVHERMDFWMRFILLEWSPWLLRM 342
Query: 213 ELPSQE 230
++P +E
Sbjct: 343 KMPDRE 348
>U41546-5|AAC48222.2| 1022|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 12
protein.
Length = 1022
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = -1
Query: 566 GDDKSVKTQYFSENKNKNHSTNNLGC*AVP-RTPASPTMPMAKPAARPENPTAKPAPKWM 390
GDD+ + T FSE+ N+ N+ +P + P + K + +P+A P
Sbjct: 840 GDDEKIMTTRFSESMPVNYKCRNVEVPRIPNKLPQNMERMARKTRKKRSSPSASDPPVPT 899
Query: 389 NPL 381
+PL
Sbjct: 900 SPL 902
>Z81481-4|CAB03950.1| 345|Caenorhabditis elegans Hypothetical
protein C38D9.4 protein.
Length = 345
Score = 29.5 bits (63), Expect = 2.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 581 CVQVDGDDKSVKTQYFSENKNKNHSTNNLGC 489
C+ +DGD+ +K + EN+ + N +GC
Sbjct: 53 CIAIDGDNCYLKIKTPDENRTLGYKKNEIGC 83
>Z81135-4|CAB03457.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 476 RTPASPTMPMAKPAARPENPTAKPAPK 396
+TPA PT +AKPA +P P + PAPK
Sbjct: 47 KTPARPT--VAKPAPKP-TPKSAPAPK 70
>AL032634-4|CAA21599.1| 500|Caenorhabditis elegans Hypothetical
protein W01G7.5 protein.
Length = 500
Score = 29.5 bits (63), Expect = 2.5
Identities = 15/27 (55%), Positives = 19/27 (70%)
Frame = -1
Query: 476 RTPASPTMPMAKPAARPENPTAKPAPK 396
+TPA PT +AKPA +P P + PAPK
Sbjct: 47 KTPARPT--VAKPAPKP-TPKSAPAPK 70
>Z81125-10|CAB03385.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 306 YCHLRSGRGCPDCWCPPGASQ 368
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>Z79694-1|CAB01959.1| 303|Caenorhabditis elegans Hypothetical
protein C15A11.1 protein.
Length = 303
Score = 28.7 bits (61), Expect = 4.4
Identities = 15/37 (40%), Positives = 17/37 (45%)
Frame = -1
Query: 509 STNNLGC*AVPRTPASPTMPMAKPAARPENPTAKPAP 399
STN G P P P P + AA PE+P P P
Sbjct: 178 STNEPGSPG-PAGPPGPAGPAGEDAAAPESPPGPPGP 213
>Z66565-6|CAA91483.1| 165|Caenorhabditis elegans Hypothetical
protein T04F8.8 protein.
Length = 165
Score = 28.7 bits (61), Expect = 4.4
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 482 VPRTPASPTMPMAKPAARPENPTAKPAPK 396
VP P PT P +P RPE P +P P+
Sbjct: 96 VPPPPPPPTQPEPEPEPRPE-PQPEPQPE 123
>U46673-4|AAC48152.2| 1535|Caenorhabditis elegans Laminin related.
see also lmb-protein 2 protein.
Length = 1535
Score = 28.7 bits (61), Expect = 4.4
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = +3
Query: 288 CRHGGYYCHLRSGRGCPDCWCPPGASQ 368
C HG Y ++ SG GC +C C P S+
Sbjct: 915 CAHGFY--NITSGLGCQECNCDPLGSE 939
>AL008585-1|CAA15432.3| 3102|Caenorhabditis elegans Hypothetical
protein T22A3.8 protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 306 YCHLRSGRGCPDCWCPPGASQ 368
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>AF074902-1|AAC26793.1| 3102|Caenorhabditis elegans laminin alpha
chain protein.
Length = 3102
Score = 28.7 bits (61), Expect = 4.4
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 306 YCHLRSGRGCPDCWCPPGASQ 368
Y ++ SG GC DC C P S+
Sbjct: 1074 YFNITSGDGCEDCGCDPTGSE 1094
>AL132860-21|CAB60518.2| 759|Caenorhabditis elegans Hypothetical
protein Y56A3A.27 protein.
Length = 759
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 479 PRTPASPTMPMAKPAARPENPTAKPAPK 396
P P +P P AKP RP + PA K
Sbjct: 639 PTGPPAPPKPPAKPRGRPPRKSISPAVK 666
>AF057032-1|AAC13567.1| 759|Caenorhabditis elegans DNA
topoisomerase III protein.
Length = 759
Score = 28.3 bits (60), Expect = 5.9
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = -1
Query: 479 PRTPASPTMPMAKPAARPENPTAKPAPK 396
P P +P P AKP RP + PA K
Sbjct: 639 PTGPPAPPKPPAKPRGRPPRKSISPAVK 666
>AF039050-10|AAC47933.2| 362|Caenorhabditis elegans Seven tm
receptor protein 82 protein.
Length = 362
Score = 28.3 bits (60), Expect = 5.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 256 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLY 381
RPE ++ +VMA + AIY + +++ L NY LY
Sbjct: 35 RPEYGSYKLLMMVMATLYAIYSAIEVIILPSYLVFEYNYLLY 76
>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical protein
W01F3.3 protein.
Length = 2175
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/24 (50%), Positives = 13/24 (54%), Gaps = 1/24 (4%)
Frame = +3
Query: 309 CHLRSGR-GCPDCWCPPGASQLPP 377
C L + R GCP C CPP PP
Sbjct: 933 CQLVNDRSGCPFCSCPPVKQASPP 956
>Z69792-1|CAB61002.1| 605|Caenorhabditis elegans Hypothetical
protein F40E10.1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 288 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 413
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>D85744-1|BAA12861.1| 605|Caenorhabditis elegans HCH-1 protein.
Length = 605
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +3
Query: 288 CRHGGYYCHLRSGRGCPDCWCPPG-ASQLPPLQRVHPLGCWFG 413
C++GGY + C +C CPPG QL + + GC G
Sbjct: 331 CQNGGYI----NPNDCNNCKCPPGFGGQLCDVAGTNSNGCGAG 369
>AF099923-3|AAN63403.1| 784|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform c protein.
Length = 784
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 483 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 307
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 570 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 629
Query: 306 N 304
N
Sbjct: 630 N 630
>AF099923-2|AAM48544.1| 814|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform a protein.
Length = 814
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 483 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 307
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 570 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 629
Query: 306 N 304
N
Sbjct: 630 N 630
>AF099923-1|AAM48545.1| 853|Caenorhabditis elegans Ferm domain
(protein4.1-ezrin-radixin-moesin) family protein 8,
isoform b protein.
Length = 853
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/61 (26%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Frame = -3
Query: 483 STTHACISHD-AYGETGSQTRESYSQTSTQVDEPFVKGVVGWLLEGTSNQDSHDQTVDGN 307
S H + D Y ET SQT + + T V E N+D D +
Sbjct: 609 SAIHTVVKSDWNYSETSSQTEKPFDPTDGPPSYEIANSFVQIAFENEQNEDHFDTEISRQ 668
Query: 306 N 304
N
Sbjct: 669 N 669
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 479 PRTPASPTM--PMAKPAARPENPTAKPAPK 396
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 479 PRTPASPTM--PMAKPAARPENPTAKPAPK 396
PRTP +P + P +P A P A+P P+
Sbjct: 434 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 463
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 479 PRTPASPTM--PMAKPAARPENPTAKPAPK 396
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 27.9 bits (59), Expect = 7.8
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Frame = -1
Query: 479 PRTPASPTM--PMAKPAARPENPTAKPAPK 396
PRTP +P + P +P A P A+P P+
Sbjct: 484 PRTPKTPAVVEPEPEPVAEEPEPVAEPEPE 513
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,148,708
Number of Sequences: 27780
Number of extensions: 410718
Number of successful extensions: 1597
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 1374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1579
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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