Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120305.Seq
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...   153   2e-39
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    24   1.3  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    23   2.9  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   6.7  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   6.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   8.9  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   8.9  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   8.9  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synthase
           16 kDa proteolipidsubunit protein.
          Length = 156

 Score =  153 bits (370), Expect = 2e-39
 Identities = 74/81 (91%), Positives = 77/81 (95%)
 Frame = +1

Query: 256 RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPLYKGFIHLGAGLAVGFSGLA 435
           RPELIMKSIIPVVMAGIIAIYGLVVAVLIAG L+EP  Y L+KGF+HLGAGLAVGFSGLA
Sbjct: 47  RPELIMKSIIPVVMAGIIAIYGLVVAVLIAGGLEEPKGYTLFKGFVHLGAGLAVGFSGLA 106

Query: 436 AGFAIGIVGDAGVRGTAQQPR 498
           AGFAIGIVGDAGVRGTAQQPR
Sbjct: 107 AGFAIGIVGDAGVRGTAQQPR 127



 Score = 79.0 bits (186), Expect = 4e-17
 Identities = 37/40 (92%), Positives = 39/40 (97%)
 Frame = +2

Query: 128 ENNPIYGPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 247
           E++PIY PFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM
Sbjct: 4   EDHPIYAPFFGVMGAASAIIFSALGAAYGTAKSGTGIAAM 43



 Score = 48.0 bits (109), Expect = 9e-08
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +3

Query: 510 MILILIFAEVLGLYGLIVAIYLY 578
           MILILIFAEVLGLYGLIVAIYLY
Sbjct: 132 MILILIFAEVLGLYGLIVAIYLY 154


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +1

Query: 247 VGERPELIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANY 372
           +GE  + +  S IP +    I + G     ++AG L E +N+
Sbjct: 52  IGEPCQRVHSSRIPDLSYDFIVVGGGAARAVVAGRLSEVSNW 93


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +3

Query: 126 LKIIQSTDPSLELWGRRLLSSS 191
           + I + TDP  E W RR L  S
Sbjct: 142 MTITELTDPVKEFWERRALQIS 163


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = +1

Query: 292 VMAGIIAIYGLVVAVLIAGALQEPANY 372
           +++G+I   GL++ VLI G++ E   +
Sbjct: 413 IVSGLIT--GLIMRVLICGSISEEQKF 437


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 6.7
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +1

Query: 265 LIMKSIIPVVMAGIIAIYGLVVAVLIAGALQEPANYPL 378
           L++ SII   + G I +    VAV +   L+ P NY L
Sbjct: 46  LVLGSIIVGTVIGNILV---CVAVFLVRKLRRPCNYLL 80


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +3

Query: 510 MILILIFAEVLGLYGLIVAIY 572
           + LILIF  V G   + VAIY
Sbjct: 31  LFLILIFLSVAGNILVCVAIY 51


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 45  VSWSECVQIVITVFGTCKYSH 107
           +SW E +QI + V    +Y H
Sbjct: 694 LSWLERIQIALDVLEGIRYLH 714


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +3

Query: 45  VSWSECVQIVITVFGTCKYSH 107
           +SW E +QI + V    +Y H
Sbjct: 732 LSWLERIQIALDVLEGIRYLH 752


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,221
Number of Sequences: 438
Number of extensions: 4901
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)