Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120304.Seq
         (794 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    24   1.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          22   5.7  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      22   5.7  
Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1 p...    21   10.0 
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   10.0 
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   10.0 

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 240 KFNSLIFNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALL 371
           K   L   ++CF   ++   C+T  G+Y+  +    + S + LL
Sbjct: 413 KRKELFIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLL 456


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 24.2 bits (50), Expect = 1.4
 Identities = 11/44 (25%), Positives = 21/44 (47%)
 Frame = +3

Query: 240 KFNSLIFNLICFNLGILFFLCLTSLGVYIVIIAGWSSNSNYALL 371
           K   L   ++CF   ++   C+T  G+Y+  +    + S + LL
Sbjct: 466 KRKELFIAIVCFVSYLIGLFCITEGGMYVFQLLDSYAVSGFCLL 509


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 696 LKSFL*IKYLNIQPKKLKQIPLFYIQY*IQKLTLFHLQQNQKEFDLF 556
           +K FL I    + P+  +   L+Y Q   +   LF L  + K+FD+F
Sbjct: 79  VKEFLSIYKHGMLPRG-ELFSLYYPQLLREMSALFKLFYHAKDFDIF 124


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -3

Query: 696 LKSFL*IKYLNIQPKKLKQIPLFYIQY*IQKLTLFHLQQNQKEFDLF 556
           +K FL I    + P+  +   L+Y Q   +   LF L  + K+FD+F
Sbjct: 79  VKEFLSIYKHGMLPRG-ELFSLYYPQLLREMSALFKLFYHAKDFDIF 124


>Y13429-1|CAA73841.1|  402|Apis mellifera dopamine receptor, D1
           protein.
          Length = 402

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = -2

Query: 634 PLLYSILNPETNSLSPSAKSKGVR 563
           P++YSI N E         +KG R
Sbjct: 322 PIIYSIFNTEFREAFKRILTKGAR 345


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 324 IVIIAGWSSNSNYALLGGLRSVAQTIS 404
           ++ +  W+S  N  +   L +V QTIS
Sbjct: 16  MIHLIAWASLENTGISDRLENVTQTIS 42


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 678 FIRMILVIINMGGYNL 725
           FIR++LVI+   GY L
Sbjct: 54  FIRIVLVILLRAGYVL 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,940
Number of Sequences: 438
Number of extensions: 1857
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)