Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120303.Seq
         (856 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|...    77   2e-15
SPBC418.02 |||NatA N-acetyltransferase complex subunit |Schizosa...    27   2.6  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    27   3.4  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   5.9  
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni...    26   7.8  

>SPMIT.05 |cob1|cob|cytochrome b, Cob1|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 387

 Score = 77.4 bits (182), Expect = 2e-15
 Identities = 41/87 (47%), Positives = 51/87 (58%), Gaps = 2/87 (2%)
 Frame = +2

Query: 254 FFICIYLHIGRGIYYKSFNLKYV*LXXXXXXXXXXXXXXXX--YVLP*GQISFWGATVIT 427
           FFI +YLHIGRG+YY S+                         Y LP  Q+SFWGATVIT
Sbjct: 89  FFIFLYLHIGRGLYYGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVIT 148

Query: 428 NLLSAIPYLGTILVN*I*GGFAVDNAT 508
           NLLSA+P++G  LV+ + GGF+V N T
Sbjct: 149 NLLSAVPFIGDDLVHLLWGGFSVSNPT 175



 Score = 68.9 bits (161), Expect = 8e-13
 Identities = 34/92 (36%), Positives = 49/92 (53%)
 Frame = +3

Query: 3   KTHPIFKIINNXXXXXXXXXXXXXXXXXXXXXALCLIIQIITGLFLTIYYTANIEIAFYR 182
           K++P   + NN                     A  L+IQI+ G+ L  +Y  N+++AF  
Sbjct: 5   KSNPFLALANNYMIDAPEPSNISYFWNFGSLLACVLVIQIVIGILLACFYIPNMDLAFLS 64

Query: 183 VNYICRNVNYG*IIRTLHANGASFFLFAFIYI 278
           V  I R+VNYG ++R  HANGASFF F F+Y+
Sbjct: 65  VERIVRDVNYGFLLRAFHANGASFF-FIFLYL 95



 Score = 46.0 bits (104), Expect = 7e-06
 Identities = 39/173 (22%), Positives = 59/173 (34%), Gaps = 3/173 (1%)
 Frame = +1

Query: 253 FFYLHLFTYRTRNLL*IF*LKICMINWNYN---FIYTNSNCFHRLCLTLRSNIFLGGNRN 423
           FF++ L+ +  R L          + WN     F+ T    F   CL      F G    
Sbjct: 88  FFFIFLYLHIGRGLYYGSYKYPRTMTWNIGVIIFLLTIITAFLGYCLPANQMSFWGATVI 147

Query: 424 YKSIICNPLFRNYISKLNLRGICCR*CYITRFYTXXXXXXXXXXXXXXXXXXXXXQTGSN 603
              +   P   + +  L   G       + RF++                       GS+
Sbjct: 148 TNLLSAVPFIGDDLVHLLWGGFSVSNPTLNRFFSLHYLMPFVIAALSVMHLIALHTNGSS 207

Query: 604 NPLGLNRNLDKIPFHPFFTFKDXXXXXXXXXXXXXXXXXNPYLLGDPDNFTPA 762
           NPLG+  N+D+IP +P++  KD                 NPY   +PD   PA
Sbjct: 208 NPLGVTANMDRIPMNPYYLIKDLITIFIFLIGINYMAFYNPYGFMEPDCALPA 260


>SPBC418.02 |||NatA N-acetyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +1

Query: 328 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGN 417
           NWN      +SN  +RLC TL  + FL GN
Sbjct: 132 NWNRLLQLDSSNLEYRLCFTL--SAFLSGN 159


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/52 (25%), Positives = 24/52 (46%)
 Frame = +1

Query: 328 NWNYNFIYTNSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFRNYISKLNLR 483
           N +Y F + N      + L+  S + L  +   + I+CN L R+ +   N +
Sbjct: 45  NTSYTFPFENHKNISHIALSPTSTLLLSVDEEGRCILCNFLRRSVLHYFNFK 96


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
 Frame = +3

Query: 123 ITGLFLTIYYTANIEIAFYRVNYICR---NVNYG*IIRTLHANGASFFLFAFIYISDE 287
           +TG+F      ++ E  F+R+ ++C     + Y  I  TLH   A  FLF+   +S +
Sbjct: 1   MTGMFFFASLFSSFESLFFRLFFVCSFFFPLLYSFIFATLH---AFVFLFSHTLVSSQ 55


>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
           Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 318

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 10/34 (29%), Positives = 16/34 (47%)
 Frame = +1

Query: 355 NSNCFHRLCLTLRSNIFLGGNRNYKSIICNPLFR 456
           N  C+H++C +    IF  G     +  CN + R
Sbjct: 31  NPECYHKMCESCVDRIFTTGPAQCPTPGCNKILR 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,802,946
Number of Sequences: 5004
Number of extensions: 49250
Number of successful extensions: 93
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 89
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)