Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120303.Seq
         (856 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)         47   2e-05
SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)               36   0.055

>SB_12207| Best HMM Match : Cytochrom_B_N (HMM E-Value=2.3e-07)
          Length = 102

 Score = 47.2 bits (107), Expect = 2e-05
 Identities = 21/46 (45%), Positives = 34/46 (73%), Gaps = 1/46 (2%)
 Frame = +3

Query: 144 IYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGAS-FFLFAFIYI 278
           ++Y A++ +AF  V++I R+VNYG ++R  HANGAS FF+  + +I
Sbjct: 1   MHYCADVSLAFASVDHIMRDVNYGFLLRYAHANGASMFFICLYAHI 46



 Score = 38.3 bits (85), Expect = 0.008
 Identities = 13/20 (65%), Positives = 18/20 (90%)
 Frame = +2

Query: 251 IFFICIYLHIGRGIYYKSFN 310
           +FFIC+Y HIGRG+YY S++
Sbjct: 37  MFFICLYAHIGRGLYYGSYS 56


>SB_27597| Best HMM Match : Cytochrom_B_N (HMM E-Value=0)
          Length = 135

 Score = 35.5 bits (78), Expect = 0.055
 Identities = 16/44 (36%), Positives = 25/44 (56%)
 Frame = +2

Query: 377 YVLP*GQISFWGATVITNLLSAIPYLGTILVN*I*GGFAVDNAT 508
           Y LP  QI +W   ++T +  AIP +G+ LV  + G  +V  +T
Sbjct: 64  YSLPRDQIGYWAVKIVTGVPEAIPVIGSPLVELLRGSASVGQST 107


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,925,586
Number of Sequences: 59808
Number of extensions: 314269
Number of successful extensions: 487
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 453
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 487
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2431332827
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)