Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120303.Seq
         (856 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) conta...    78   7e-15
At1g12170.1 68414.m01409 F-box family protein contains F-box dom...    31   1.3  

>At2g07727.1 68415.m00977 cytochrome b (MTCYB) (COB) (CYTB) contains
           Pfam profile PF00033: Cytochrome b(N-terminal)/b6/petB;
           ontains Pfam profile PF00032: Cytochrome
           b(C-terminal)/b6/petD; 99% identical to  apocytochrome B
           (GI:6851014), cytochrome b (GI:402962), and Cytochrome b
           (Swiss-Prot:P42792) [Arabidopsis thaliana]
          Length = 393

 Score = 78.2 bits (184), Expect = 7e-15
 Identities = 41/88 (46%), Positives = 55/88 (62%), Gaps = 2/88 (2%)
 Frame = +2

Query: 251 IFFICIYLHIGRGIYYKSFNL--KYV*LXXXXXXXXXXXXXXXXYVLP*GQISFWGATVI 424
           +F I +YLHI RG+Y+ S++   ++V                  YVLP GQ+SFWGATVI
Sbjct: 94  MFLIVVYLHIFRGLYHASYSSPREFVWCLGVVIFLLMIVTAFIGYVLPWGQMSFWGATVI 153

Query: 425 TNLLSAIPYLGTILVN*I*GGFAVDNAT 508
           T+L SAIP +G  +V  + GGF+VDNAT
Sbjct: 154 TSLASAIPVVGDTIVTWLWGGFSVDNAT 181



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 28/59 (47%), Positives = 45/59 (76%)
 Frame = +3

Query: 102 LCLIIQIITGLFLTIYYTANIEIAFYRVNYICRNVNYG*IIRTLHANGASFFLFAFIYI 278
           +CL+IQI+TG+FL ++YT ++++AF  V +I R+V  G ++R +HANGAS FL   +Y+
Sbjct: 44  ICLVIQIVTGVFLAMHYTPHVDLAFNSVEHIMRDVEGGWLLRYMHANGASMFLIV-VYL 101



 Score = 52.8 bits (121), Expect = 3e-07
 Identities = 32/83 (38%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = +1

Query: 589 QTGSNNPLGLNRNLDKIPFHPFFTFKDXXXXXXXXXXXXXXXXXNPYLLGDPDNFTPAIH 768
           Q GSNNPLG++  +DKI F+P+F  KD                  P +LG PDN+ PA  
Sbjct: 209 QYGSNNPLGVHSEMDKIAFYPYFYVKDLVGWVAFAIFFSIWIFYAPNVLGHPDNYIPANP 268

Query: 769 **HQSYST-RMIFLFAYAILRSI 834
                +      FL  +AILRSI
Sbjct: 269 MSTPPHIVPEWYFLPIHAILRSI 291


>At1g12170.1 68414.m01409 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 364

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = +2

Query: 92  PTSFMSNNSNYYWIIFNNILHSKY*NSFL*SK-LYLPKCKL-WLNNS 226
           P S +S N N YW++ N   H  +  SF  SK +Y   C L W  NS
Sbjct: 196 PLSDVSLNGNLYWVVSNGETHECFIESFDFSKEIYKCFCTLPWNYNS 242


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,797,938
Number of Sequences: 28952
Number of extensions: 231545
Number of successful extensions: 337
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 332
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 335
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1989897600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)