Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120300.Seq
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    28   1.7  
SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|ch...    28   1.7  
SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit Tfa2...    27   2.9  
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    27   3.9  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    27   3.9  
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces...    27   3.9  
SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces pom...    26   5.1  
SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|...    26   5.1  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    26   6.8  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    26   6.8  
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc...    25   9.0  

>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 19/58 (32%), Positives = 28/58 (48%), Gaps = 2/58 (3%)
 Frame = +1

Query: 553 ECPDNYTFDAKTRQC*VNEL-CENRPDGYILSYFPSNLLVNQFMQCVSGR-HVVRECP 720
           +CPD  + +  T  C   +  C+N   GYI SY PSN + +    C  G    + +CP
Sbjct: 66  DCPDG-SDEPGTSACHNGKFFCKNT--GYISSYIPSNRVDDTVCDCCDGSDESLIKCP 120


>SPAC17G6.05c |||Rhophilin-2 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 775

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +3

Query: 132 QNTYTVTWFNTVDLSTYQESVHDDRNEIF---DFLNQKLQPVDRSYTIALEQMMKIPTSL 302
           QNT   T F ++DLS  QE  H D    F   + +  + Q +  + T  + ++    T L
Sbjct: 410 QNTQMATVFASLDLSRLQEITHSDSKTNFIPKELIEARSQLISFNPTFKIHELFAKSTKL 469


>SPCC1672.08c |tfa2||transcription factor TFIIE beta subunit
           Tfa2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = +3

Query: 30  TTYTKRLQVMIEYIKRTNADEPTPNVIGYVSDITQNTYTVTWFNTVDLSTYQESVHDDRN 209
           T Y  +L   +EY+K  N  +    +  Y+S       T    N   L       +D+RN
Sbjct: 77  THYLSQLHYAVEYLKERNEPKTAEEIASYLS----TPLTPMLLNL--LKKNNRIYYDERN 130

Query: 210 EIFDF 224
           E F F
Sbjct: 131 ETFTF 135


>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
            Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
 Frame = +2

Query: 425  MDERLLDTLVLNQHLDKDYSSNE---HLYHPRSILGV---LQTERTQSKNVQTITR 574
            +D ++ D L   + L   Y SNE    +YHP   LG+   L     Q  N+Q I +
Sbjct: 1302 IDLKVFDDLETTEGLLSSYCSNEWNREVYHPLYALGITASLLHSNQQVSNIQVIVQ 1357


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +2

Query: 272 RANDENPNE--FILSGDKDDVTMKCPAYFNFDYAQLKCVPVPPCDNKPAGRY 421
           R   E P+   + LS    + + + P Y+N++Y Q    P  P  N   G Y
Sbjct: 427 RFTQEPPSSSLYSLSESSINYSTQSPMYYNYNYPQPSFPPFHPIYNDSIGYY 478


>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 796

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 263 DRVRANDENPNEFILSGDKDDVTMKCPAYFNFDYAQLKCV 382
           D +RA   +P +  L    DD+T+KC   FN+D +  KCV
Sbjct: 99  DYIRALVVHPTQPFLLTSSDDMTIKC---FNWDMS-WKCV 134


>SPCC1906.02c |||CUE domain protein Cue3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/26 (50%), Positives = 14/26 (53%)
 Frame = -3

Query: 591 AGFCVKRVIVWTFFDCVRSVCKTPKI 514
           A FC K V+VWT   CV S    P I
Sbjct: 129 ANFC-KLVLVWTVCQCVSSTVYYPAI 153


>SPAC25H1.07 |||DUF1620 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 885

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 162 TVDLSTYQESVHDDRNEIFDFLNQ 233
           T  L++YQ+S+ D+ N    FLN+
Sbjct: 382 TTLLTSYQKSIQDEENSSVSFLNR 405


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
            subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/53 (22%), Positives = 30/53 (56%)
 Frame = +3

Query: 132  QNTYTVTWFNTVDLSTYQESVHDDRNEIFDFLNQKLQPVDRSYTIALEQMMKI 290
            QNT +++    + L T +E + + ++  FD++N +   V+  + I  E+++ +
Sbjct: 1454 QNTVSISERRELQLKTAKEILSNCKHLDFDYVNGEWATVELVFPINTEKLLMV 1506


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +3

Query: 207 NEIFDFLNQKLQPVDRSYTIALEQMMKI 290
           N  F+F   K++P+  SY  A+E   K+
Sbjct: 275 NREFNFFGNKIEPIQASYDHAVEVYKKL 302


>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
           polymerase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1120

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 14/51 (27%), Positives = 28/51 (54%)
 Frame = +2

Query: 437 LLDTLVLNQHLDKDYSSNEHLYHPRSILGVLQTERTQSKNVQTITRLTQKP 589
           L+D L LN+ LDK   ++  +Y P   L +L +++  +  +  + +L+  P
Sbjct: 310 LIDDLALNESLDK--KNDRLIYGP--FLKLLSSKKLAALTIMEVAQLSTNP 356


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,243,266
Number of Sequences: 5004
Number of extensions: 69503
Number of successful extensions: 185
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)