Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120300.Seq
(764 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0020 + 140220-140312,141282-141665 30 2.3
03_06_0230 - 32518749-32519143,32519301-32519589 30 2.3
11_06_0070 + 19802893-19803026,19803054-19803816 29 3.1
05_03_0499 - 14733380-14733394,14733948-14733975,14735286-14736268 29 3.1
07_03_0136 + 14089787-14090269 29 5.4
05_03_0200 + 9752625-9753182 29 5.4
12_01_0179 - 1319291-1319332,1319884-1320579,1322759-1323207,132... 28 9.4
11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,141... 28 9.4
10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676 28 9.4
06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016 28 9.4
>11_01_0020 + 140220-140312,141282-141665
Length = 158
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = -3
Query: 738 DRIFYSRAFTHHVAPAYTLHK-LVDEQIRGKV**YIAVWPVFTQFVNLTLAGFCVKRVIV 562
D++ R FTHH+AP+Y + ++ + K + V V T+ +VI
Sbjct: 66 DKVLSLRVFTHHMAPSYVKYSPMIRRCLSSKHSELELAYVVLADTVEATMVSV---QVIE 122
Query: 561 WTFFDCVRS--VCKTPKIERG 505
++ D +R VC+T +E G
Sbjct: 123 GSWPDHMRGLVVCRTASVEGG 143
>03_06_0230 - 32518749-32519143,32519301-32519589
Length = 227
Score = 29.9 bits (64), Expect = 2.3
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Frame = +2
Query: 335 KCPAYFNFDYAQLKCVPVPPCDNKPAGRYPMDERL---LDTLVLNQHLDKDYSSNEHLY 502
+ P+Y DY+ + P PP G P D+ +T +++ DKD+ S+E ++
Sbjct: 72 RIPSYNLDDYSDYEPTPAPPSPLPSYGPEPADDETDKDFETDLVDSVTDKDFESDEAIW 130
>11_06_0070 + 19802893-19803026,19803054-19803816
Length = 298
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = -1
Query: 509 GDDTSVRC*NNLCPSVGSTPTC---PANARPWDNDRRACCRTAAREHILIVRNQS*NMRG 339
G+D + S+G T P R W RR R + E ++ + RG
Sbjct: 83 GEDNAATSVEETATSIGVPATYRSRPKTGRYWTPTRRPLRRASGEEEVMPGMRAASRSRG 142
Query: 338 ISWSRRPCRR 309
W RRP R
Sbjct: 143 RWWRRRPALR 152
>05_03_0499 - 14733380-14733394,14733948-14733975,14735286-14736268
Length = 341
Score = 29.5 bits (63), Expect = 3.1
Identities = 14/34 (41%), Positives = 18/34 (52%)
Frame = +3
Query: 69 IKRTNADEPTPNVIGYVSDITQNTYTVTWFNTVD 170
I + + D+ TP VI + SD N YT TW D
Sbjct: 241 ILQFDLDDQTPAVIEWPSDSDPNCYTQTWLTEGD 274
>07_03_0136 + 14089787-14090269
Length = 160
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = -1
Query: 509 GDDTSVRC*NNLCPSVGSTPTC---PANARPWDNDRRACCRTAAREHILIVRNQS*NMRG 339
G+D + S+G T P R W RR R + E ++ + RG
Sbjct: 19 GEDNAATSTEETATSIGVPATYRSRPETGRYWTPTRRPLRRASGEEEVMPGMMAASRSRG 78
Query: 338 ISWSRRPCRR 309
W RRP R
Sbjct: 79 RWWRRRPALR 88
>05_03_0200 + 9752625-9753182
Length = 185
Score = 28.7 bits (61), Expect = 5.4
Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 3/70 (4%)
Frame = -1
Query: 509 GDDTSVRC*NNLCPSVGSTPTC---PANARPWDNDRRACCRTAAREHILIVRNQS*NMRG 339
G+D + SVG T P R W RR R + E ++ + RG
Sbjct: 30 GEDDTATSTEETATSVGVPATYRSRPKTGRYWMPTRRPLRRASGEEEVMPGMRAASRSRG 89
Query: 338 ISWSRRPCRR 309
W RRP R
Sbjct: 90 RWWRRRPALR 99
>12_01_0179 -
1319291-1319332,1319884-1320579,1322759-1323207,
1323291-1324903,1324991-1325077,1326983-1327251
Length = 1051
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 440 LDTLVLNQHLDKDYSSNEHLYHPRSILGVLQTERTQSKN 556
++T+ + +HLDK +SNE R+ G + + KN
Sbjct: 179 VETVAVEEHLDKTTTSNEVYVRERNFEGNIHDTHWEEKN 217
>11_01_0179 - 1412391-1412863,1412947-1413412,1413504-1414551,
1414639-1414725,1416244-1416411,1416785-1416958,
1417662-1417720,1418132-1420154,1420549-1420647,
1420998-1421796,1422101-1422120,1422446-1422513
Length = 1827
Score = 27.9 bits (59), Expect = 9.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 440 LDTLVLNQHLDKDYSSNEHLYHPRSILGVLQTERTQSKN 556
++T+ + +HLDK +SNE R+ G + + KN
Sbjct: 1226 VETVAVEEHLDKTTTSNEVYVRERNFEGNIHDTHWEEKN 1264
>10_01_0172 - 1928648-1930751,1932019-1932243,1933709-1934676
Length = 1098
Score = 27.9 bits (59), Expect = 9.4
Identities = 18/49 (36%), Positives = 25/49 (51%)
Frame = -3
Query: 573 RVIVWTFFDCVRSVCKTPKIERG*YKCSLLE*SLSKCWFNTNVSSKRSS 427
R+IV + F V S C P+ + Y S L SK FN +VS +S+
Sbjct: 429 RIIVTSRFQAVGSTCCRPENKDLLYPISFLSPRDSKELFNRSVSESKST 477
>06_01_0752 + 5632809-5633690,5635372-5635509,5635711-5636016
Length = 441
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/41 (36%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +2
Query: 392 PCDNKPAG--RYPMDERLLDTLVLNQHLDKDYSSNEHLYHP 508
PC +KP +P + L +L+LN HLD + E HP
Sbjct: 84 PCKSKPLLLLTWPGTDPSLPSLLLNSHLDSVPAEPEQWLHP 124
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,940,767
Number of Sequences: 37544
Number of extensions: 442594
Number of successful extensions: 1046
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1046
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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