Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120300.Seq
         (764 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36668| Best HMM Match : Phage_AlpA (HMM E-Value=7.3)                39   0.004
SB_40824| Best HMM Match : His_leader (HMM E-Value=3.1)                29   5.4  
SB_12910| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  

>SB_36668| Best HMM Match : Phage_AlpA (HMM E-Value=7.3)
          Length = 227

 Score = 39.1 bits (87), Expect = 0.004
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = +2

Query: 422 PMDERLLDTLVLNQHLDKDYSSNEHLYHPRSILGVLQTERTQSKNVQTITRLTQKPASVK 601
           P  ERL+ T  +   L K  +S EH Y+ R +  + +  R   K++QT TR +    +  
Sbjct: 139 PSGERLIATGAMASFLQKVVTSGEHAYNARVLDDLGELTRRHFKDLQTFTRQSHSAGANS 198

Query: 602 LTNCVKTGQTAIYYHTFPL 658
            +  V   Q  +Y+ + PL
Sbjct: 199 QSYQVPPQQGTLYHQSGPL 217


>SB_40824| Best HMM Match : His_leader (HMM E-Value=3.1)
          Length = 456

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +2

Query: 482 SSNEHLYHPRSILGVLQTERTQSKNVQTITRLTQKPASVKL 604
           +S+ H YH R+I+ ++ T  +  +    I+ +T+K ++  L
Sbjct: 286 TSSRHQYHHRNIISIITTSLSSQEYHNDISIITEKSSAASL 326


>SB_12910| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 172

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 24/100 (24%), Positives = 42/100 (42%), Gaps = 1/100 (1%)
 Frame = +2

Query: 389 PPCDNKPAGR-YPMDERLLDTLVLNQHLDKDYSSNEHLYHPRSILGVLQTERTQSKNVQT 565
           PP D   A +  P D+ + +T V +  LD+D  S        S  G   T   Q   +  
Sbjct: 60  PPQDTGEAKQGKPSDQTVDNTEVADMDLDEDSDSENGKSSESSSTGQKTTPSAQDSPITA 119

Query: 566 ITRLTQKPASVKLTNCVKTGQTAIYYHTFPLICSSTNLCS 685
           +T  T   AS    +  +T  +++  +T     ++T++ S
Sbjct: 120 MTTATTVTASKSAVSISETSSSSV-SNTTKSAATTTDIAS 158


>SB_22653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 737

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 374 KCVPVPPCDNKPAGRYPMDERLLDTLVLNQHLDKDYSSNEHL 499
           K +PV   D+ P   +P+D+ L    +L+  LD D  S E L
Sbjct: 93  KSLPVNGVDSLPLKTHPVDDELPVDQILDDKLDIDRLSTEAL 134


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,690,866
Number of Sequences: 59808
Number of extensions: 544347
Number of successful extensions: 1308
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1307
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2072022557
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)