Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120300.Seq
         (764 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical pr...    32   0.39 
Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical pr...    29   2.7  
U28991-10|AAK68306.2|  487|Caenorhabditis elegans Hypothetical p...    29   2.7  
U28991-9|AAU05576.1|  484|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.     28   6.3  
AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.     28   6.3  
AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical ...    28   6.3  
AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical ...    28   6.3  
Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z68337-8|CAA92749.2|  241|Caenorhabditis elegans Hypothetical pr...    28   8.4  
AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta...    28   8.4  

>U39744-3|AAK18884.2|  563|Caenorhabditis elegans Hypothetical
           protein C03F11.3 protein.
          Length = 563

 Score = 32.3 bits (70), Expect = 0.39
 Identities = 17/47 (36%), Positives = 28/47 (59%)
 Frame = +3

Query: 105 VIGYVSDITQNTYTVTWFNTVDLSTYQESVHDDRNEIFDFLNQKLQP 245
           V+G  +D T N++T +W N+  +ST Q  V+D  N I   +N+ + P
Sbjct: 47  VLGLNADGTLNSFTDSWVNSKYISTMQYWVYDYTNTI-GIMNRAIYP 92


>Z68005-3|CAA91990.1| 1227|Caenorhabditis elegans Hypothetical protein
            F59F3.1 protein.
          Length = 1227

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 29/103 (28%), Positives = 44/103 (42%), Gaps = 7/103 (6%)
 Frame = +3

Query: 3    LAIYFKFDETTYTKRLQ-VMIEYIKRTNADEPTPNVIGYVSDITQN-----TYTVTWFNT 164
            L +  K     +   LQ +M E +K   A    PNV+  +  +T+N      Y VT F  
Sbjct: 881  LPVAVKSSTNPFNVELQKMMAEELKVMCAIPKNPNVLALIGAVTKNMRQGQLYIVTEF-- 938

Query: 165  VDLSTYQESVHDDRNE-IFDFLNQKLQPVDRSYTIALEQMMKI 290
            +D    +E +   RN  I + +  +  PVD SY +      KI
Sbjct: 939  IDGGNLREFLQAHRNTFINELVEDEHVPVDDSYLVPNSVKKKI 981


>U28991-10|AAK68306.2|  487|Caenorhabditis elegans Hypothetical
           protein F08F8.10a protein.
          Length = 487

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 108 IGYVSDITQNTYTVTWFNTVDLSTYQESVHDDRNEIFDFLNQKLQPV 248
           IG  S + QN+Y   +    D S +  S HD  +   DF  Q  +P+
Sbjct: 356 IGRRSQLEQNSYASQYCGRSDYSNHHSSYHDSHHPQDDFYYQDGRPM 402


>U28991-9|AAU05576.1|  484|Caenorhabditis elegans Hypothetical
           protein F08F8.10b protein.
          Length = 484

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +3

Query: 108 IGYVSDITQNTYTVTWFNTVDLSTYQESVHDDRNEIFDFLNQKLQPV 248
           IG  S + QN+Y   +    D S +  S HD  +   DF  Q  +P+
Sbjct: 353 IGRRSQLEQNSYASQYCGRSDYSNHHSSYHDSHHPQDDFYYQDGRPM 399


>AY077615-1|AAL79359.1|  510|Caenorhabditis elegans KSR-2b protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 GYVSDITQNTYTVTWFNTVDLSTYQESVHDDRNEIFD 221
           GYVSD   NTY +   N    +T    +H+  +E FD
Sbjct: 272 GYVSDPVTNTYAIV-TNFYQHNTLYHRIHEQLSEDFD 307


>AY077614-1|AAL79358.1|  550|Caenorhabditis elegans KSR-2a protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 GYVSDITQNTYTVTWFNTVDLSTYQESVHDDRNEIFD 221
           GYVSD   NTY +   N    +T    +H+  +E FD
Sbjct: 312 GYVSDPVTNTYAIV-TNFYQHNTLYHRIHEQLSEDFD 347


>AL137227-5|CAB70240.2|  510|Caenorhabditis elegans Hypothetical
           protein F58D5.4b protein.
          Length = 510

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 GYVSDITQNTYTVTWFNTVDLSTYQESVHDDRNEIFD 221
           GYVSD   NTY +   N    +T    +H+  +E FD
Sbjct: 272 GYVSDPVTNTYAIV-TNFYQHNTLYHRIHEQLSEDFD 307


>AL137227-4|CAB70239.2|  550|Caenorhabditis elegans Hypothetical
           protein F58D5.4a protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = +3

Query: 111 GYVSDITQNTYTVTWFNTVDLSTYQESVHDDRNEIFD 221
           GYVSD   NTY +   N    +T    +H+  +E FD
Sbjct: 312 GYVSDPVTNTYAIV-TNFYQHNTLYHRIHEQLSEDFD 347


>Z92789-7|CAB07215.2| 1319|Caenorhabditis elegans Hypothetical
           protein H02I12.1 protein.
          Length = 1319

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 514 YLRCFANGAHAVEECPDNYTFDAKTRQC*VNELC 615
           ++ C  NG + +  CP   TFD   R C  +E C
Sbjct: 587 FIFCSGNGINRMAACPIGETFDKTLRSC--SETC 618


>Z68337-8|CAA92749.2|  241|Caenorhabditis elegans Hypothetical
           protein M7.12 protein.
          Length = 241

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 180 YQESV-HDDRNEIFDFLNQKLQ 242
           Y E+V HD+RNE+ DFLN   +
Sbjct: 25  YFETVKHDNRNEVVDFLNNNFR 46


>AF003136-1|AAK21379.3|  896|Caenorhabditis elegans Importin beta
           family protein 1 protein.
          Length = 896

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +2

Query: 425 MDERLLDTLVLNQHLDKDYSSNEHLYHPRSILGVLQTERTQ 547
           M+E LL    L +HL K + S  ++  P  + G+  T+ TQ
Sbjct: 635 MEEALLAVACLAEHLGKGFLSYMNVLKPYLLEGLSNTDETQ 675


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,228,456
Number of Sequences: 27780
Number of extensions: 401827
Number of successful extensions: 1000
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 999
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)