Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120300.Seq
         (764 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica...    28   5.9  
At3g17500.1 68416.m02235 F-box family protein contains Pfam prof...    28   7.8  

>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
           domain-containing protein / zinc finger protein-related
           similar to RUSH-1alpha [Oryctolagus cuniculus]
           GI:1655930; contains Pfam profiles PF00271: Helicase
           conserved C-terminal domain, PF00176: SNF2 family
           N-terminal domain
          Length = 1226

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
 Frame = +1

Query: 526 FANGAHAVEECPDNYTFDAKTRQC*VNELCENRPDGYILSYFPS-----NLLVNQFMQCV 690
           F+  + ++ +C  +  +   T    ++E+  N   GY   +FP      N L N+F+ C 
Sbjct: 182 FSPNSSSIVDCASSEPYGHHTMDAPLSEVSPNLVPGYAFQFFPKKEELLNDLKNEFIHCQ 241

Query: 691 S 693
           S
Sbjct: 242 S 242


>At3g17500.1 68416.m02235 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 438

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 21/74 (28%), Positives = 41/74 (55%)
 Frame = +3

Query: 30  TTYTKRLQVMIEYIKRTNADEPTPNVIGYVSDITQNTYTVTWFNTVDLSTYQESVHDDRN 209
           T  T+R+Q  I Y  +TN++     V+GYV++ ++++Y +  +    +S Y+ S      
Sbjct: 119 TGQTRRVQHSIHY--KTNSEF----VLGYVNNNSRHSYKILRYWNFYMSNYRVS----EF 168

Query: 210 EIFDFLNQKLQPVD 251
           EI+DF +   + +D
Sbjct: 169 EIYDFSSDSWRFID 182


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,824,947
Number of Sequences: 28952
Number of extensions: 359707
Number of successful extensions: 825
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 825
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1712086600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)