Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120299.Seq
         (787 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1565.07c |||TATA binding protein interacting protein |Schizo...    31   0.19 
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    28   1.3  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.3  
SPBC216.06c |swi1||replication fork protection complex subunit S...    27   3.0  
SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|...    26   5.3  
SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces pomb...    26   7.0  
SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces po...    25   9.3  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.3  

>SPAC1565.07c |||TATA binding protein interacting protein
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1220

 Score = 31.1 bits (67), Expect = 0.19
 Identities = 16/49 (32%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
 Frame = +1

Query: 547  CRPQMTQVQTDTLLDAVRSLLEMPSTTVDLTT-----VDIMRSSFARCF 678
            C P +   Q DT+L+A+R ++E+  T   L T     +D++RS+    F
Sbjct: 1132 CSPSIIDEQVDTILEALRKIIELRKTEKTLKTDSDNILDLVRSALRVLF 1180


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/53 (24%), Positives = 27/53 (50%)
 Frame = +1

Query: 553 PQMTQVQTDTLLDAVRSLLEMPSTTVDLTTVDIMRSSFARCFNSPIMKYAKIV 711
           PQ+T++    + D VR        T+D ++++I +S+F        +K A ++
Sbjct: 182 PQVTELLATVIADLVRGEFLQLKNTMDPSSLEIKQSNFDYYIEKSFLKTASLI 234


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +1

Query: 400 QTNPSLFVEQHQF-YRIQNQRRGHDHDIFAAIGKVSFVFKLLETTFDDYTCRPQMTQVQT 576
           +  P+ F E+ +F +  +N+       I   +G +S +   L   + +Y C PQM+ +  
Sbjct: 423 RATPTSFTERKRFAFDTRNRPPEVRELIVECLGSLSRIPYFLIDLYVNYDCDPQMSDLAI 482

Query: 577 DTLLDAVRSLL 609
           D L    R+ L
Sbjct: 483 DLLKVLTRNCL 493


>SPBC216.06c |swi1||replication fork protection complex subunit
           Swi1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 971

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 12/47 (25%), Positives = 26/47 (55%)
 Frame = +3

Query: 558 NDAGSNGHAVGRRAISVGDAFDHSRLDDRRYYAVVVCTLFQQSDYEI 698
           N+ G++G  +G+      D+F+ + L D ++  ++    F++SD  I
Sbjct: 749 NEGGNDGERMGKNLKGDTDSFNTALLKDGKFRLLLELCGFEESDNNI 795


>SPAC6F6.02c |pof5||F-box protein Pof5|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 348

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +2

Query: 386 RNAARKLIHHYSLNSTS 436
           R   RKL+HH SLN+ S
Sbjct: 65  RKPTRKLVHHISLNNVS 81


>SPBC839.03c |||neddylation protein Dcn1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +1

Query: 16  SSVTMSAIALYLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINF 177
           S+ ++  + L ++      + D  +Q AI+   +PL CD+ +   L+T + I F
Sbjct: 119 STTSLDQLKLAIKEKVQVWRSDASLQKAIYIYTYPLACDKGKKT-LSTSIAIEF 171


>SPAC1296.06 |||NADPH cytochrome reductase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 558

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 124 LCDEHQNVQLNTDVLINFI 180
           +CD H+N   N D+L  F+
Sbjct: 387 ICDLHENTSFNIDILPGFL 405


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 16/56 (28%), Positives = 31/56 (55%), Gaps = 2/56 (3%)
 Frame = +1

Query: 112 IFPLLC--DEHQNVQLNTDVLINFIMHVARKSQNTILNNNAAIASQYAAGTRASSS 273
           IF LLC  D H++V L+   L + + ++A+ S+  +       +SQ   G R++++
Sbjct: 300 IFNLLCIEDLHESVNLDILCLKDILRNIAQSSKEAMYIVKRHNSSQSFYGNRSTTN 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,004
Number of Sequences: 5004
Number of extensions: 58701
Number of successful extensions: 185
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 178
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)