Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120299.Seq
(787 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1289 + 25531531-25531995 30 2.4
01_06_1365 - 36690267-36692222 29 3.2
02_01_0471 - 3364215-3364912,3365511-3365742,3365827-3366198,336... 29 4.2
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 29 5.5
12_01_0408 - 3226191-3228005 28 9.7
06_02_0352 + 15083174-15083433,15083973-15084108 28 9.7
04_01_0206 + 2507827-2508705,2508844-2509902 28 9.7
03_06_0030 + 31161821-31161927,31163700-31163934,31164064-311648... 28 9.7
02_05_0433 - 28939817-28940146 28 9.7
01_06_1604 + 38567374-38567391,38567505-38567636,38569377-385694... 28 9.7
>07_03_1289 + 25531531-25531995
Length = 154
Score = 29.9 bits (64), Expect = 2.4
Identities = 15/31 (48%), Positives = 15/31 (48%)
Frame = -1
Query: 622 SKASPTEIARRPTACPFEPASFAVCTCSRQT 530
SK PT A RPTA PA V C QT
Sbjct: 99 SKLQPTPAAARPTATGAPPAMVVVSACQFQT 129
>01_06_1365 - 36690267-36692222
Length = 651
Score = 29.5 bits (63), Expect = 3.2
Identities = 20/88 (22%), Positives = 38/88 (43%)
Frame = +1
Query: 244 YAAGTRASSSQRQVPPILRRVP**ICLREPTPSRLRTFRRADQHAPIQKCCSQTNPSLFV 423
Y G A + PP L R+P + + E TP+ + R+D P++ P +
Sbjct: 340 YLFGAGAGIGLGRAPPPLSRLPPMMSVLEDTPATI--VERSDGQIPVEDDADIDPPGGSL 397
Query: 424 EQHQFYRIQNQRRGHDHDIFAAIGKVSF 507
+ +Y + RR + +++ + SF
Sbjct: 398 QTRDYYLDSSTRRRRSLERSSSVRRPSF 425
>02_01_0471 -
3364215-3364912,3365511-3365742,3365827-3366198,
3366324-3366449,3367056-3367262,3367399-3367492,
3367575-3367621,3367705-3368157,3368261-3368560,
3368656-3369114,3369189-3369410,3369659-3369890,
3370051-3370422,3371210-3371322,3371682-3371903,
3371977-3372180,3372308-3372572,3373123-3373311,
3373441-3373768,3373843-3374248,3374339-3374648,
3375677-3375837,3376825-3376998,3377265-3377609,
3377713-3377754,3378585-3378734,3378847-3379002,
3379088-3379540,3379651-3379966,3380402-3380839,
3381475-3381697,3383538-3383852,3384033-3384095,
3384699-3384903,3385362-3385425,3386014-3386204
Length = 3048
Score = 29.1 bits (62), Expect = 4.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = -3
Query: 239 DAMAALLFKIVFCDLRATCIIKFINTSVFNCTF*CSSQSK 120
D+ +L + +C+ A IIK ++T VF C C+S+S+
Sbjct: 456 DSQVSLSISVAYCEQCARWIIKVLST-VFPCIKACASESE 494
>01_03_0256 + 14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 28.7 bits (61), Expect = 5.5
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 1/89 (1%)
Frame = +1
Query: 385 QKCCSQT-NPSLFVEQHQFYRIQNQRRGHDHDIFAAIGKVSFVFKLLETTFDDYTCRPQM 561
+ CCS+ +L+V+ + R+ R A + V+ V L + D+T Q
Sbjct: 1132 KSCCSEVIKHALYVD---YVRVLRSLRKKGRTEQAVLKAVNQVCGLEFSRISDFTKSVQY 1188
Query: 562 TQVQTDTLLDAVRSLLEMPSTTVDLTTVD 648
Q Q LLD SL E P + L TV+
Sbjct: 1189 GQKQLKQLLDGEESLAEFPYASF-LQTVE 1216
>12_01_0408 - 3226191-3228005
Length = 604
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/25 (56%), Positives = 18/25 (72%)
Frame = -1
Query: 400 ASSISVSAHVDQLFGRCAGATALAR 326
ASS++ S H+ +GRC G TALAR
Sbjct: 44 ASSVASSNHLLAAYGRC-GCTALAR 67
>06_02_0352 + 15083174-15083433,15083973-15084108
Length = 131
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 512 SNCSKPRLTTTRADRK*RRFKRTRCWTPCDLCWRCLR 622
+ C + + DR+ F +R T C CW+C+R
Sbjct: 51 ATCGGEAVVPSPGDRRTVVFATSRATTFCRPCWKCMR 87
>04_01_0206 + 2507827-2508705,2508844-2509902
Length = 645
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = -2
Query: 615 HLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEQF 514
+LQ R H +++ L+L++ S + KRG F
Sbjct: 190 YLQDRDHRIREEEELSLQYAHSLHHICKRGIVNF 223
>03_06_0030 +
31161821-31161927,31163700-31163934,31164064-31164826,
31165816-31167650,31169294-31169424,31169993-31170075,
31170426-31170680,31171125-31171220,31171695-31171775,
31171811-31171968,31172434-31172534,31172614-31172629,
31173390-31173439,31174558-31174588,31175156-31175305,
31176135-31176173,31176288-31176410,31176496-31176552,
31176837-31176911,31177003-31177107
Length = 1496
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/39 (35%), Positives = 18/39 (46%)
Frame = +1
Query: 502 SFVFKLLETTFDDYTCRPQMTQVQTDTLLDAVRSLLEMP 618
S KL ET D+Y RPQ ++ D +LL P
Sbjct: 861 SLTLKLEETKIDEYWSRPQAPEIPNDEQAGLSVNLLTKP 899
>02_05_0433 - 28939817-28940146
Length = 109
Score = 27.9 bits (59), Expect = 9.7
Identities = 12/50 (24%), Positives = 31/50 (62%)
Frame = -2
Query: 654 HNIDGRQVDCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVKRGFEQFEHE 505
H +D R+ + RH Q+R+ ++Q+ R +++ L R+++++ + + E +
Sbjct: 32 HRLDVRRQEALERHAQERA-AIEQQWRQSMQALERERLMLEQAWMEREEQ 80
>01_06_1604 +
38567374-38567391,38567505-38567636,38569377-38569445,
38569545-38569775,38570883-38571013,38571471-38571629,
38573078-38573366
Length = 342
Score = 27.9 bits (59), Expect = 9.7
Identities = 13/50 (26%), Positives = 24/50 (48%)
Frame = +1
Query: 61 KLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKSQNT 210
K RLK++ P I ++ D + +N + L++ + HV +NT
Sbjct: 145 KTRLKLESPRSWRISIDEVAVVADSDGDADVNAEQLLHLLEHVGAIGENT 194
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,201,022
Number of Sequences: 37544
Number of extensions: 403054
Number of successful extensions: 1152
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1152
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2115411120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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