Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120299.Seq
         (787 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_13898| Best HMM Match : DUF987 (HMM E-Value=3.4)                    30   1.8  
SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.5  
SB_27962| Best HMM Match : Clathrin (HMM E-Value=4.1)                  28   9.9  
SB_24348| Best HMM Match : TPR_2 (HMM E-Value=2.1e-17)                 28   9.9  
SB_21867| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.9  
SB_21172| Best HMM Match : LIM (HMM E-Value=1.3)                       28   9.9  

>SB_13898| Best HMM Match : DUF987 (HMM E-Value=3.4)
          Length = 421

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = -2

Query: 702 RVFHNRTVETTCKRRPHNID-GRQVDCGRRHLQQRSHG 592
           RV+   T+++T   RPH +D        R + QQR HG
Sbjct: 347 RVYQQETIDSTVNTRPHGMDKSLPARDNRLYRQQRPHG 384


>SB_55441| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 694

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 494 EKYHSCSNCSKPRLTTTRADRK*RRFKRTRCWTPCDLCWRCLRPQST 634
           EK H C+ C K  +T  + DR  R     + +  C++C +  R + +
Sbjct: 514 EKPHECTQCEKAFITKAKLDRHFRTHSGEKPYR-CEICEKSFRDKDS 559


>SB_23556| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 671

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 20/56 (35%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
 Frame = +2

Query: 368 INMRRYRNAARKLIHHY-SLNSTSSTEYKISDVVMTMIFLLRSEKYHSCSNCSKPR 532
           +N ++ R+    LI    S+ S SS +   S V+   I  L+S+K  S ++CSKPR
Sbjct: 28  MNEKKRRDRFNVLIGELASIISPSSRKVDKSTVLKKAIACLKSQKDLSPASCSKPR 83


>SB_23046| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2708

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
 Frame = +1

Query: 22   VTMSAIALYLEINKLRLKIDEPMQLAIWPQIFPLLCDEHQNVQLNTDVLINFIMHVARKS 201
            V+   +  Y  ++K   ++  P  + +W    PL+ + +  V  N   L+ F  HV    
Sbjct: 1908 VSFFVVMNYCLVSKTEKEMFTPFCVDLWRLFHPLMSEPNIAVHHNKQALLIFWYHVCMDC 1967

Query: 202  QNTI--LNNNAAIASQYAAGTRASSSQRQVPPILRRV 306
            +  +  + +   +A+  A     SS + +V    R V
Sbjct: 1968 EVNVAFITDTTQVANNIALNYILSSDEPEVITFNRNV 2004


>SB_4880| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 961

 Score = 28.3 bits (60), Expect = 7.5
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = -3

Query: 353 VRRRDGVG-SRKQIYYGTRRRMGGTWRC 273
           ++R D VG SR     G+R RM G WRC
Sbjct: 531 LKRSDFVGPSRSGKGMGSRGRMSGVWRC 558


>SB_27962| Best HMM Match : Clathrin (HMM E-Value=4.1)
          Length = 255

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/49 (34%), Positives = 22/49 (44%)
 Frame = +3

Query: 603 SVGDAFDHSRLDDRRYYAVVVCTLFQQSDYEIRENSAVTKRGFTARPTH 749
           S+ +AF+HS L D R YA +V   F  S  +     A     F   P H
Sbjct: 187 SLVEAFNHSPLQDHRLYASLV-EAFNHSSLQDHRLYASLVEAFNHSPLH 234


>SB_24348| Best HMM Match : TPR_2 (HMM E-Value=2.1e-17)
          Length = 463

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +1

Query: 682 SPIMKYAKIVLLQNVASQRDQRTTLEEC 765
           SP+  Y K V L  +A QR     L+EC
Sbjct: 198 SPLALYGKAVALDKLADQRRSNDLLQEC 225


>SB_21867| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 864

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = -3

Query: 392 HFCIGAC*SALRKVRRRDGVGSRKQIYYGTRRRMGGTWRCDDDARVPAAY*DAMAALLFK 213
           H    AC +  R+VR   G  + K+  YGT   +     C  D  + +   DA+A    K
Sbjct: 56  HVAADACRNGRRRVRTLRGANTGKRGVYGTTANVAVCHACYVDLGLASRTTDALADSFLK 115

Query: 212 I 210
           +
Sbjct: 116 L 116


>SB_21172| Best HMM Match : LIM (HMM E-Value=1.3)
          Length = 274

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 463 HVADFVFCRTGAVQR 419
           H+AD+V+CRTG   R
Sbjct: 51  HLADYVYCRTGVAHR 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,802,237
Number of Sequences: 59808
Number of extensions: 486113
Number of successful extensions: 1497
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1331
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)