Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120299.Seq
(787 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U00033-3|AAC48304.2| 351|Caenorhabditis elegans Serpentine rece... 29 2.9
U00033-2|AAP68944.1| 351|Caenorhabditis elegans Serpentine rece... 29 2.9
AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical ... 29 2.9
U41007-6|AAA82269.2| 348|Caenorhabditis elegans Hypothetical pr... 28 8.7
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 8.7
AF067211-3|ABC71845.1| 720|Caenorhabditis elegans Hypothetical ... 28 8.7
AF067211-2|AAC16990.3| 745|Caenorhabditis elegans Hypothetical ... 28 8.7
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 8.7
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 8.7
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 8.7
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 8.7
>U00033-3|AAC48304.2| 351|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 9 protein.
Length = 351
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 419 SLNSTSSTEYKISDVVMTMIFLLRSEKYHSCSNCS 523
S+NST ST++++ +V + +F++ YH CS
Sbjct: 227 SINSTLSTKFQLEEVYFSTMFVITVVFYHVAFFCS 261
>U00033-2|AAP68944.1| 351|Caenorhabditis elegans Serpentine
receptor, class b (beta)protein 8 protein.
Length = 351
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/35 (34%), Positives = 22/35 (62%)
Frame = +2
Query: 419 SLNSTSSTEYKISDVVMTMIFLLRSEKYHSCSNCS 523
S+NST ST++++ +V + +F++ YH CS
Sbjct: 227 SINSTLSTKFQLEEVYFSTMFVITVVFYHVAFFCS 261
>AL034393-1|CAA22308.1| 1634|Caenorhabditis elegans Hypothetical
protein Y18D10A.1 protein.
Length = 1634
Score = 29.5 bits (63), Expect = 2.9
Identities = 16/59 (27%), Positives = 27/59 (45%)
Frame = +1
Query: 445 IQNQRRGHDHDIFAAIGKVSFVFKLLETTFDDYTCRPQMTQVQTDTLLDAVRSLLEMPS 621
I N H H IFAA+ ++S L + + D + DAV++L+++ S
Sbjct: 1560 IDNPFSSHSHAIFAALKQISPQVSQLREIIESSEINQYVEMTGEDAIRDAVQNLVDLIS 1618
>U41007-6|AAA82269.2| 348|Caenorhabditis elegans Hypothetical
protein C33H5.10 protein.
Length = 348
Score = 27.9 bits (59), Expect = 8.7
Identities = 18/74 (24%), Positives = 33/74 (44%), Gaps = 1/74 (1%)
Frame = +1
Query: 424 EQHQFYRIQNQ-RRGHDHDIFAAIGKVSFVFKLLETTFDDYTCRPQMTQVQTDTLLDAVR 600
E + Y I+ R+ +DH++ + +S LE ++ TC T+ Q+ + +
Sbjct: 19 EIRELYEIEEYVRQPNDHNLLEFLYDLSTFLLELECPHEELTCGDIRTRFQSSSAKKLLE 78
Query: 601 SLLEMPSTTVDLTT 642
S L+ T L T
Sbjct: 79 SFLDSEVKTARLIT 92
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 705 FRVFHNRT-VETTCKRRPHNIDGRQVD 628
F F +T V+ K+RPH IDG+ VD
Sbjct: 68 FVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF067211-3|ABC71845.1| 720|Caenorhabditis elegans Hypothetical
protein B0205.1b protein.
Length = 720
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 559 MTQVQTDTLLDAVRSLLEMPSTTVD-LTTVDIMRSSFARCFNSPIMKY 699
+T +++DTL+D +R + E+ + T D + D++ + CF K+
Sbjct: 604 LTSLESDTLIDLMREIKELRNRTNDEILPPDLVIPALQTCFMGITRKF 651
>AF067211-2|AAC16990.3| 745|Caenorhabditis elegans Hypothetical
protein B0205.1a protein.
Length = 745
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/48 (27%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +1
Query: 559 MTQVQTDTLLDAVRSLLEMPSTTVD-LTTVDIMRSSFARCFNSPIMKY 699
+T +++DTL+D +R + E+ + T D + D++ + CF K+
Sbjct: 629 LTSLESDTLIDLMREIKELRNRTNDEILPPDLVIPALQTCFMGITRKF 676
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 705 FRVFHNRT-VETTCKRRPHNIDGRQVD 628
F F +T V+ K+RPH IDG+ VD
Sbjct: 30 FVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 705 FRVFHNRT-VETTCKRRPHNIDGRQVD 628
F F +T V+ K+RPH IDG+ VD
Sbjct: 30 FVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 705 FRVFHNRT-VETTCKRRPHNIDGRQVD 628
F F +T V+ K+RPH IDG+ VD
Sbjct: 68 FVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 27.9 bits (59), Expect = 8.7
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -2
Query: 705 FRVFHNRT-VETTCKRRPHNIDGRQVD 628
F F +T V+ K+RPH IDG+ VD
Sbjct: 68 FVTFSGKTEVDAAMKQRPHIIDGKTVD 94
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,390,232
Number of Sequences: 27780
Number of extensions: 355460
Number of successful extensions: 1134
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1134
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1903721438
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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