Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120299.Seq
         (787 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g29580.1 68414.m03617 hypothetical protein                          31   0.66 
At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ...    29   4.6  
At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family pr...    29   4.6  
At2g47520.1 68415.m05931 AP2 domain-containing transcription fac...    28   8.1  

>At1g29580.1 68414.m03617 hypothetical protein
          Length = 89

 Score = 31.5 bits (68), Expect = 0.66
 Identities = 16/61 (26%), Positives = 30/61 (49%)
 Frame = -2

Query: 711 HYFRVFHNRTVETTCKRRPHNIDGRQVDCGRRHLQQRSHGVQQRVRLNLRHLRSARVVVK 532
           H + +  N    T  + R  N D   VD  +++L++    +QQR+ L   + +S   +VK
Sbjct: 27  HLYPLVENLKDVTESRARDQNSDALYVDVQKQNLEESEQLLQQRMELIEEYKKSVEEIVK 86

Query: 531 R 529
           +
Sbjct: 87  K 87


>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 100

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -2

Query: 669 CKRRPHNIDGRQVDCGRRHLQQRSHGVQ 586
           C+   H IDGR V+C   +L  R H  Q
Sbjct: 67  CENPNHTIDGRTVNCKLAYLGARVHNYQ 94


>At1g61050.1 68414.m06873 alpha 1,4-glycosyltransferase family
           protein / glycosyltransferase sugar-binding DXD
           motif-containing protein low similarity to
           alpha-1,4-N-acetylglucosaminyltransferase, Homo sapiens
           [gi:5726306], Gb3 synthase, Rattus norvegicus
           [gi:9082162] ; contains Pfam profiles PF04572: Alpha
           1,4-glycosyltransferase conserved region, PF04488:
           Glycosyltransferase sugar-binding region containing DXD
           motif
          Length = 435

 Score = 28.7 bits (61), Expect = 4.6
 Identities = 19/62 (30%), Positives = 31/62 (50%)
 Frame = +2

Query: 410 HHYSLNSTSSTEYKISDVVMTMIFLLRSEKYHSCSNCSKPRLTTTRADRK*RRFKRTRCW 589
           H   L+  +ST   +SD  + ++      K  S     K  +++TR ++K RRFKR+   
Sbjct: 66  HLQILHHQTSTSSSVSDSSLLLVV-----KETSLGFIQKQNVSSTRIEKKTRRFKRSTEL 120

Query: 590 TP 595
           TP
Sbjct: 121 TP 122


>At2g47520.1 68415.m05931 AP2 domain-containing transcription
           factor, putative
          Length = 171

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 344 RDGVGSRKQIYYGTRRRMGGTWRCD 270
           RDG   RK +Y G R+R  G W  +
Sbjct: 40  RDGKRERKNLYRGIRQRPWGKWAAE 64


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,953,027
Number of Sequences: 28952
Number of extensions: 311182
Number of successful extensions: 891
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 862
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 891
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)