Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120298.Seq
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 67 2e-12
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 63 4e-11
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 54 2e-08
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 52 7e-08
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 52 1e-07
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 50 5e-07
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 47 4e-06
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 45 1e-05
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 42 8e-05
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 41 2e-04
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 41 2e-04
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 40 4e-04
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 37 0.004
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 36 0.007
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 35 0.015
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 34 0.020
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 32 0.11
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 31 0.19
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 3.0
SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.0
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 26 5.3
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 7.0
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo... 26 7.0
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 26 7.0
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos... 26 7.0
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr... 26 7.0
SPAC27F1.08 |pdt1||Nramp family manganese ion transporter|Schizo... 26 7.0
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 9.3
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 25 9.3
SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|ch... 25 9.3
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 9.3
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 67.3 bits (157), Expect = 2e-12
Identities = 32/85 (37%), Positives = 47/85 (55%), Gaps = 7/85 (8%)
Frame = +1
Query: 1 AACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWK-------MLNKNNDST 159
A CAL NRWC+TGTP+ N ++YS++ FL PFND VWK + N
Sbjct: 399 ACCALQGINRWCLTGTPLQNNVDELYSLVKFLHINPFNDQSVWKDQISLPLCQGEENLVF 458
Query: 160 NRIKSIIKKIVLKRDKSEISFNIPK 234
R++ ++ I+L+R K+ + N K
Sbjct: 459 KRLRMLLSVIMLRRTKTLLEANAGK 483
Score = 39.9 bits (89), Expect = 4e-04
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +2
Query: 551 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 730
K I+ SQ+ +L I + ++ I + Y G++ R + + + TQ +LL S+
Sbjct: 672 KTIIFSQFTTFLDIIDLHLRKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQ--VLLCSL 729
Query: 731 KCGGVGLNL 757
KCG +GLNL
Sbjct: 730 KCGALGLNL 738
Score = 27.9 bits (59), Expect = 1.7
Identities = 20/60 (33%), Positives = 30/60 (50%), Gaps = 9/60 (15%)
Frame = +3
Query: 276 KTLYDKLKCESEEAYMKAVA--ARESENTLSRL-------QQMQHVLWLILKLRQICCHP 428
K L K+ C+ EE+ + AR E T+S + ++L L+L+LRQ C HP
Sbjct: 494 KRLVYKVICKFEESERDFYSNLARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQACNHP 553
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 63.3 bits (147), Expect = 4e-11
Identities = 35/93 (37%), Positives = 54/93 (58%), Gaps = 1/93 (1%)
Frame = +2
Query: 497 QVQTVLDLVDDILNTSD-DKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILA 673
+++ L+ V +I+ DKI++ SQ+V +L++F F+Q+ I LMYTG L +R
Sbjct: 866 KIEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAER--N 923
Query: 674 ETTFNNAADTQHRILLLSIKCGGVGLNLIGEPH 772
+ N D R+LL+S+K G VGLNL H
Sbjct: 924 QALINFEVDPNVRVLLISLKAGNVGLNLTCANH 956
Score = 50.4 bits (115), Expect = 3e-07
Identities = 26/79 (32%), Positives = 47/79 (59%), Gaps = 11/79 (13%)
Frame = +1
Query: 7 CALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNK-------NNDSTN- 162
C L +T RWC++GTP+ N + YS+I FL+ +P++D W +K +N +T+
Sbjct: 556 CLLESTYRWCLSGTPMQNGVEEFYSLIKFLRIKPYSD---WSSFSKDFTIPLSSNINTSA 612
Query: 163 ---RIKSIIKKIVLKRDKS 210
R + ++K ++L+R K+
Sbjct: 613 PMKRFRGLLKAVLLRRTKN 631
Score = 35.9 bits (79), Expect = 0.007
Identities = 14/32 (43%), Positives = 22/32 (68%)
Frame = +3
Query: 384 VLWLILKLRQICCHPYLAMHGRNLLETNDCFK 479
+L L+L+LRQ CCHP+L + ++ ND F+
Sbjct: 689 LLVLLLRLRQACCHPWLIVAREAAVDDNDSFQ 720
Score = 27.1 bits (57), Expect = 3.0
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 109 FNDPRVWKMLNKNNDSTNRIKSIIKK 186
F DP+ W K + N +K IIKK
Sbjct: 855 FTDPKHWTTSTKIEKALNAVKEIIKK 880
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 54.4 bits (125), Expect = 2e-08
Identities = 31/88 (35%), Positives = 50/88 (56%)
Frame = +2
Query: 494 QQVQTVLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILA 673
Q QT+LD++ N +KI++ SQ+ +YL + + K +NI + Y G + R +
Sbjct: 727 QARQTILDIIGSKRN---EKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQKS 783
Query: 674 ETTFNNAADTQHRILLLSIKCGGVGLNL 757
+FNN D ++L+S+K G VGLNL
Sbjct: 784 LHSFNNDKDV--LVMLVSLKAGSVGLNL 809
Score = 43.6 bits (98), Expect = 3e-05
Identities = 28/81 (34%), Positives = 44/81 (54%), Gaps = 3/81 (3%)
Frame = +1
Query: 13 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTNRIKSIIKKIV 192
L A RWC++GTPI N + YS++ FL+ +P+ VW + K D + +KS IV
Sbjct: 416 LDAKYRWCLSGTPIQNHIDEFYSLLKFLRIKPY---CVWSLFAK--DISRPLKSYRADIV 470
Query: 193 ---LKRDKSEISFNIPKHTVE 246
LKR + ++ + + T E
Sbjct: 471 EAALKRLRILLASTVFRRTKE 491
Score = 32.3 bits (70), Expect = 0.081
Identities = 20/64 (31%), Positives = 33/64 (51%)
Frame = +3
Query: 243 RVCTVNFNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICC 422
R +VN EE+ LY++ ++ +++ LSR +L +L+LRQ CC
Sbjct: 508 RTVSVNLLPEERALYNEQMSSAQSLVDNYF---NNDHDLSRYG---FLLVSLLRLRQFCC 561
Query: 423 HPYL 434
HP+L
Sbjct: 562 HPWL 565
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 52.4 bits (120), Expect = 7e-08
Identities = 31/83 (37%), Positives = 49/83 (59%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+L L+ L T +I+L SQ+++ L I E++F+ KNIA + G +R A +F
Sbjct: 875 ILRLLVPKLITRGHRILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSAIDSF- 933
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
NA +++ LLS + GGVG+NL
Sbjct: 934 NAPNSELSCFLLSTRAGGVGINL 956
Score = 37.1 bits (82), Expect = 0.003
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +1
Query: 37 ITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLN-KNNDSTNRIKSIIKKIVLKRDKSE 213
+TGTP+ N ++++++ FL N + K + + + + I+K L+R KSE
Sbjct: 716 LTGTPLQNNVRELFNLLQFLNPMKINAAELEKRYSIIDTEKVTELHQILKPFFLRRVKSE 775
Query: 214 ISFNIPKHTVEYVQLILMKKKK 279
+ N P + L + +K
Sbjct: 776 VLDNFPTKVEVIIPLSMTPVQK 797
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 51.6 bits (118), Expect = 1e-07
Identities = 28/78 (35%), Positives = 40/78 (51%)
Frame = +2
Query: 530 ILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQH 709
I +DDKI+L+S + L +FE + + L G + V R TFN+ +
Sbjct: 622 IKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQRLVDTFND-PEKDA 680
Query: 710 RILLLSIKCGGVGLNLIG 763
+ LLS K GG G+NLIG
Sbjct: 681 FVFLLSSKAGGCGINLIG 698
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 49.6 bits (113), Expect = 5e-07
Identities = 28/76 (36%), Positives = 49/76 (64%), Gaps = 8/76 (10%)
Frame = +1
Query: 4 AC-ALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWK----MLNKNND---ST 159
AC ++++ NRW ITGTPI NK D+YS+I F++ P+ + W+ + ++ D +
Sbjct: 671 ACHSISSQNRWVITGTPIVNKLDDLYSLIKFMRYEPWCNYTYWQTFVSLPYQSKDVLKAL 730
Query: 160 NRIKSIIKKIVLKRDK 207
N ++SI++ +VL+R K
Sbjct: 731 NVVQSILEFLVLRRTK 746
Score = 48.0 bits (109), Expect = 2e-06
Identities = 27/99 (27%), Positives = 52/99 (52%), Gaps = 1/99 (1%)
Frame = +2
Query: 479 NGLYEQQVQTVLDLVDDILNTSD-DKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKV 655
N L ++ +L + + ++S+ +K+++ SQ+ +L I + + + + + G +
Sbjct: 958 NRLQSVKLNGLLGQLRQLTHSSEPEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQ 1017
Query: 656 EDRILAETTFNNAADTQHRILLLSIKCGGVGLNLIGEPH 772
+ R A TF N D +L++S+K GGVGLNL H
Sbjct: 1018 QMRSTALETFRNDPDVN--VLIISLKAGGVGLNLTCANH 1054
Score = 34.7 bits (76), Expect = 0.015
Identities = 23/75 (30%), Positives = 38/75 (50%)
Frame = +3
Query: 255 VNFNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 434
++F++ E+ +YD L +++ + A TL R +L L+L+LRQ CC P L
Sbjct: 769 LDFSDSERKIYDSLYTKAKSTVNANIVA----GTLFR--NYTTILGLLLRLRQACCDPVL 822
Query: 435 AMHGRNLLETNDCFK 479
+ ET D F+
Sbjct: 823 LSNMTINSETFDDFE 837
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 46.8 bits (106), Expect = 4e-06
Identities = 25/71 (35%), Positives = 37/71 (52%)
Frame = +2
Query: 551 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 730
K ++VSQ+ E L++ E F ++ G +R L FN ++ + +LLLS
Sbjct: 550 KAVIVSQYKETLELIELFLSILHVRFCKLLGSTPFSERDLIVHNFNTSSFKEFSVLLLSS 609
Query: 731 KCGGVGLNLIG 763
K GG GLNL G
Sbjct: 610 KAGGCGLNLTG 620
Score = 28.7 bits (61), Expect = 1.00
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 13 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWK 132
L R +TGTP+ N + +SM+NF+ P +K
Sbjct: 361 LKTRKRLLLTGTPLQNDLSEYFSMVNFIIPGSLGTPNSFK 400
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 45.2 bits (102), Expect = 1e-05
Identities = 31/104 (29%), Positives = 51/104 (49%)
Frame = +2
Query: 452 SFGNKRLF*NGLYEQQVQTVLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATL 631
+F +KRL Y+ VLD + L ++ ++++ +Q + L I E F L
Sbjct: 979 AFPDKRLL---QYDCGKLQVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYL 1035
Query: 632 MYTGQLKVEDRILAETTFNNAADTQHRILLLSIKCGGVGLNLIG 763
G K+E R + FNN D + + +LS + GG+G+NL G
Sbjct: 1036 RLDGATKIEQRQILTERFNN--DDKIPVFILSTRSGGLGINLTG 1077
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/26 (38%), Positives = 18/26 (69%)
Frame = +1
Query: 19 ATNRWCITGTPIHNKHWDMYSMINFL 96
A +R +TGTP+ N +++S++ FL
Sbjct: 596 AEHRLLLTGTPLQNNLVELWSLLYFL 621
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 42.3 bits (95), Expect = 8e-05
Identities = 25/83 (30%), Positives = 41/83 (49%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L + K ++ Q + + I E++ + KN L G K +DR FN
Sbjct: 1191 LLDRILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFN 1250
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
+ + I +LS + GG+GLNL
Sbjct: 1251 DPKSDVY-IFMLSTRAGGLGLNL 1272
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/29 (34%), Positives = 20/29 (68%)
Frame = +1
Query: 28 RWCITGTPIHNKHWDMYSMINFLQCRPFN 114
R +TGTP+ N ++++++NF+ + FN
Sbjct: 1021 RLILTGTPLQNNLPELWALLNFVLPKIFN 1049
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 41.1 bits (92), Expect = 2e-04
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = +1
Query: 1 AACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPF 111
A C L T + C++GTP+ N+ +++S++ FL+ PF
Sbjct: 510 AVCGLRTTRKICLSGTPLQNRIGELFSLLRFLRADPF 546
Score = 29.5 bits (63), Expect = 0.57
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = +2
Query: 551 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 730
K I+ SQ+ L + ++ + G + + R F+N D I L+S+
Sbjct: 812 KSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSN--DINITIFLVSL 869
Query: 731 KCGGVGLNL 757
K GGV LNL
Sbjct: 870 KAGGVALNL 878
Score = 29.1 bits (62), Expect = 0.76
Identities = 18/60 (30%), Positives = 31/60 (51%)
Frame = +3
Query: 261 FNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYLAM 440
FNEEE+ +Y L +S+ + +A E + L ++ LI ++RQ+ HP L +
Sbjct: 641 FNEEEEDVYQSLYMDSKRKFNTYLA----EGVV--LNNYANIFQLITRMRQMADHPDLVL 694
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 41.1 bits (92), Expect = 2e-04
Identities = 24/70 (34%), Positives = 36/70 (51%)
Frame = +2
Query: 548 DKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLS 727
D+++L SQ+ + L I + K N+ L + G +V+ R F AD + LLS
Sbjct: 778 DRVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFY--ADESINVFLLS 835
Query: 728 IKCGGVGLNL 757
K GG G+NL
Sbjct: 836 TKAGGFGINL 845
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 39.9 bits (89), Expect = 4e-04
Identities = 24/83 (28%), Positives = 40/83 (48%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L S +I++ Q + + I E++ + L G K +DR FN
Sbjct: 740 LLDRILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFN 799
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
+ + + LLS + GG+GLNL
Sbjct: 800 DPT-AEVNLFLLSTRAGGLGLNL 821
Score = 28.7 bits (61), Expect = 1.00
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +1
Query: 28 RWCITGTPIHNKHWDMYSMINFLQCRPFN 114
R +TGTP+ N ++++++NF+ R FN
Sbjct: 569 RLILTGTPLQNNLPELWALLNFVLPRIFN 597
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 36.7 bits (81), Expect = 0.004
Identities = 21/71 (29%), Positives = 36/71 (50%)
Frame = +2
Query: 545 DDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLL 724
+++I++ SQ+ + L I E ++ L G VE R F+ + +++ LL
Sbjct: 780 NERILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQLIDDFHT--NENYKVFLL 837
Query: 725 SIKCGGVGLNL 757
S K GG G+NL
Sbjct: 838 STKSGGFGINL 848
Score = 26.2 bits (55), Expect = 5.3
Identities = 21/102 (20%), Positives = 51/102 (50%), Gaps = 15/102 (14%)
Frame = +1
Query: 13 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPR-----VWKMLNKNN--------- 150
+ A R ITGTP+ N ++ S++ F+ + F++ ++K+ ++
Sbjct: 562 IPANFRLLITGTPLQNNLKELISLLAFMLPKVFDNNMQGLDIIYKIKTTSDGDIERAYLS 621
Query: 151 -DSTNRIKSIIKKIVLKRDKSEISFNIPKHTVEYVQLILMKK 273
+ +R K+I+ +L+R K + ++P +++V+ M++
Sbjct: 622 QERISRAKTIMNPFILRRRKENVLSDLPP-KIQHVEYCHMEE 662
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 35.9 bits (79), Expect = 0.007
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = +2
Query: 551 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 730
+I+L SQ+ + L I E I+ + G +VE R F+ D + LLS
Sbjct: 942 RILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVRQDIIDQFHKEEDVT--VFLLST 999
Query: 731 KCGGVGLNL 757
K GG G+NL
Sbjct: 1000 KAGGFGINL 1008
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 34.7 bits (76), Expect = 0.015
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 3/77 (3%)
Frame = +2
Query: 542 SDDKIILVSQWVEYLKIFENFFKQKNIATLMYT---GQLKVEDRILAETTFNNAADTQHR 712
S+ ++++ Q + L + E Q + + Y G ++ R A T FNN D
Sbjct: 1735 SEHRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNN--DPSID 1792
Query: 713 ILLLSIKCGGVGLNLIG 763
+LLL+ GG+GLNL G
Sbjct: 1793 VLLLTTHVGGLGLNLTG 1809
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 34.3 bits (75), Expect = 0.020
Identities = 22/83 (26%), Positives = 38/83 (45%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L ++++ SQ V L I + + G + R ++ FN
Sbjct: 708 LLDKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFN 767
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
A D+ + LLS + GG+G+NL
Sbjct: 768 -APDSPDFVFLLSTRAGGLGINL 789
Score = 33.9 bits (74), Expect = 0.027
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Frame = +1
Query: 25 NRWCITGTPIHNKHWDMYSMINFLQCRPF--NDPRVWKMLNKNNDSTNR-IKSIIKKIVL 195
NR ITGTP+ N ++ S++NFL F D + N + R ++ ++ +L
Sbjct: 547 NRLLITGTPLQNNLKELASLVNFLMPGKFYIRDELNFDQPNAEQERDIRDLQERLQPFIL 606
Query: 196 KRDKSEISFNIPKHTVEYVQLIL 264
+R K ++ ++P + +++ L
Sbjct: 607 RRLKKDVEKSLPSKSERILRVEL 629
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase
Hrp3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1388
Score = 31.9 bits (69), Expect = 0.11
Identities = 21/84 (25%), Positives = 39/84 (46%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L ++++ SQ V L I ++ + G + R + FN
Sbjct: 694 LLDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFN 753
Query: 689 NAADTQHRILLLSIKCGGVGLNLI 760
A ++ + LLS + GG+G+NL+
Sbjct: 754 -APNSPDFVFLLSTRAGGLGINLM 776
Score = 31.1 bits (67), Expect = 0.19
Identities = 18/84 (21%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Frame = +1
Query: 22 TNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTNRIKSI---IKKIV 192
+NR ITGTP+ N ++ ++++FL F + + + I+S+ ++ +
Sbjct: 530 SNRLLITGTPLQNNIRELAALVDFLMPGKFEIREEINLEAPDEEQEAYIRSLQEHLQPYI 589
Query: 193 LKRDKSEISFNIPKHTVEYVQLIL 264
L+R K ++ ++P + +++ L
Sbjct: 590 LRRLKKDVEKSLPSKSERILRVEL 613
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 31.1 bits (67), Expect = 0.19
Identities = 17/75 (22%), Positives = 33/75 (44%)
Frame = +2
Query: 533 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 712
L +D ++++ Q + + E + + L G K+ R T + +
Sbjct: 1441 LKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTEWQTRPELF-- 1498
Query: 713 ILLLSIKCGGVGLNL 757
+ LLS + GG+G+NL
Sbjct: 1499 VFLLSTRAGGLGINL 1513
Score = 29.9 bits (64), Expect = 0.43
Identities = 23/103 (22%), Positives = 44/103 (42%), Gaps = 13/103 (12%)
Frame = +1
Query: 10 ALTATNRWCITGTPIHNKHWDMYSMINFLQCRPF---NDPRVW----------KMLNKNN 150
A NR +TGTPI N +++++++F+ F N+ W N
Sbjct: 995 AFKCRNRLLLTGTPIQNTMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAQSNTQLNE 1054
Query: 151 DSTNRIKSIIKKIVLKRDKSEISFNIPKHTVEYVQLILMKKKK 279
R+ I+K +L+R K + + + + V L +++K
Sbjct: 1055 QQLKRLHMILKPFMLRRVKKNVQSELGEKIEKEVYCDLTQRQK 1097
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 27.1 bits (57), Expect = 3.0
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +3
Query: 243 RVC-TVNFNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQIC 419
R+C T + E+T Y L E+ K++ + N L + WL+ +LRQ C
Sbjct: 525 RICMTTRLSVVEETNYQDLLSEAA----KSLHFFKDRN-LDLCDEESMRRWLV-RLRQAC 578
Query: 420 CHPYLAMHGRN 452
CHP + ++
Sbjct: 579 CHPQVGFGNKS 589
Score = 25.8 bits (54), Expect = 7.0
Identities = 8/28 (28%), Positives = 18/28 (64%)
Frame = +1
Query: 25 NRWCITGTPIHNKHWDMYSMINFLQCRP 108
N W ++GTP+ ++ D++ ++ L+ P
Sbjct: 450 NCWTVSGTPVRSEVDDLFGLLFLLRYSP 477
>SPBC428.10 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 751
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/42 (23%), Positives = 25/42 (59%)
Frame = +1
Query: 130 KMLNKNNDSTNRIKSIIKKIVLKRDKSEISFNIPKHTVEYVQ 255
++ +N + N ++ +K+ L ++KS+I + T+EY++
Sbjct: 492 RLCTENQSTENEDQANLKESELPKEKSDIQPKNSRSTIEYIE 533
>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 127
Score = 26.2 bits (55), Expect = 5.3
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +2
Query: 506 TVLDLVDDILNTSDDKIILVSQWVEYLKIFENFF 607
T LDL+D++LN S +I + + K + ++F
Sbjct: 5 TALDLLDELLNDSSSNMIWLYEVYMLYKTYTSYF 38
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 7.0
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 575 VEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRIL 718
V+YL +F K +N+ T MY+ K + + + TT +N + +I+
Sbjct: 727 VDYLDLFLTSLKPENVTTGMYSDTSKSQSQ-QSVTTIDNKVNLLCKII 773
>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
Length = 979
Score = 25.8 bits (54), Expect = 7.0
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +1
Query: 130 KMLNKNNDSTNRIKSIIKKIVLKRDKSEISFNIPKHTVEYVQLI 261
+ L++ + S++ + I +K + D SEIS N+P E QLI
Sbjct: 18 RSLSEESQSSSNMDDISQKSISLGDASEISKNLPS-IAEQKQLI 60
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/36 (33%), Positives = 23/36 (63%)
Frame = +2
Query: 494 QQVQTVLDLVDDILNTSDDKIILVSQWVEYLKIFEN 601
Q+ +L ++ DIL D++IIL S + E++++ N
Sbjct: 810 QRYHALLCILLDILKGYDNQIILNSTYNEFVEVLRN 845
>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 25.8 bits (54), Expect = 7.0
Identities = 8/28 (28%), Positives = 19/28 (67%)
Frame = +2
Query: 503 QTVLDLVDDILNTSDDKIILVSQWVEYL 586
+T+LDL D++ + D+++ + +W +L
Sbjct: 48 KTLLDLADELRRSRDEELEIAERWRTFL 75
>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 7.0
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -1
Query: 678 VSAKILSSTFNWPVYINVAMFFC 610
+SA +LSS F W ++ + FC
Sbjct: 173 LSATVLSSNFAWAAFLGFSASFC 195
>SPAC27F1.08 |pdt1||Nramp family manganese ion
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 521
Score = 25.8 bits (54), Expect = 7.0
Identities = 13/50 (26%), Positives = 28/50 (56%)
Frame = -2
Query: 203 SRFKTIFLIILFMRFVESLFLFNIFHTLGSLKGRHCKKLIIEYISQCLLW 54
SRF+ L I+F+ + +++L ++ LGS+ G + E+ ++ + W
Sbjct: 99 SRFQYKLLFIVFLSNLFAVYLQSLCIRLGSVTGMDLARNCREHYNRYICW 148
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 9.3
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +3
Query: 663 GFWPRRHSIMLPILNIE 713
GFWP+ +++P+L+ E
Sbjct: 191 GFWPKVQDVLVPLLDAE 207
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 25.4 bits (53), Expect = 9.3
Identities = 17/61 (27%), Positives = 32/61 (52%)
Frame = +1
Query: 133 MLNKNNDSTNRIKSIIKKIVLKRDKSEISFNIPKHTVEYVQLILMKKKKRCTIS*NVNRK 312
+LNK ND N ++S + R+ +E + NI ++ + + +KK +S N+ RK
Sbjct: 547 LLNKENDLINDVESSQSSLDKLRNDAEENRNILSSKLKVLSDLKGEKK---DVSKNIERK 603
Query: 313 R 315
+
Sbjct: 604 K 604
>SPCC320.03 |||transcription factor |Schizosaccharomyces pombe|chr
3|||Manual
Length = 867
Score = 25.4 bits (53), Expect = 9.3
Identities = 12/33 (36%), Positives = 17/33 (51%), Gaps = 2/33 (6%)
Frame = -2
Query: 572 IAKPILSCRRSCSKC--RLLNRAPFALAAHIIH 480
+ K ++ R SC L+NR PFA H+ H
Sbjct: 488 LEKAPINLRSSCLHAIYSLVNRPPFATLGHVFH 520
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 9.3
Identities = 10/35 (28%), Positives = 17/35 (48%)
Frame = -3
Query: 475 KQSFVSKRFLPCMAKYGWQQICLNFSISHNTCCIC 371
+ S V ++ C+A G ++I + CCIC
Sbjct: 571 QSSSVWSTYIKCLASAGQKEIKRSVETGRAICCIC 605
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,193,275
Number of Sequences: 5004
Number of extensions: 64676
Number of successful extensions: 281
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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