Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120298.Seq
(786 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3329| Best HMM Match : SNF2_N (HMM E-Value=1.5e-07) 62 7e-10
SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24) 54 1e-07
SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.) 48 1e-05
SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 3e-05
SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0) 45 6e-05
SB_46182| Best HMM Match : Helicase_C (HMM E-Value=7.5e-22) 44 2e-04
SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0) 44 2e-04
SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0) 42 7e-04
SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21) 41 0.001
SB_35930| Best HMM Match : SNF2_N (HMM E-Value=1.3004e-42) 40 0.003
SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0) 38 0.007
SB_46817| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_621| Best HMM Match : SNF2_N (HMM E-Value=0) 36 0.037
SB_56356| Best HMM Match : Helicase_C (HMM E-Value=1.3e-21) 33 0.20
SB_47493| Best HMM Match : Helicase_C (HMM E-Value=1.3e-16) 33 0.35
SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.61
SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.4
SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_54764| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.4
SB_53475| Best HMM Match : PAN (HMM E-Value=0.00029) 29 3.2
SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41) 29 3.2
SB_56487| Best HMM Match : ATP-synt_B (HMM E-Value=1.9) 28 9.9
SB_6207| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_3329| Best HMM Match : SNF2_N (HMM E-Value=1.5e-07)
Length = 200
Score = 61.7 bits (143), Expect = 7e-10
Identities = 29/77 (37%), Positives = 46/77 (59%), Gaps = 6/77 (7%)
Frame = +1
Query: 1 AACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWK------MLNKNNDSTN 162
A L A RW +TGTPI N+ D++S++ FL+ PF+DP WK + N D+
Sbjct: 80 AVLKLEAERRWVVTGTPIQNRIGDLWSIVRFLRLDPFSDPTWWKISIANGVTRGNEDAQE 139
Query: 163 RIKSIIKKIVLKRDKSE 213
R++++IK I ++R K +
Sbjct: 140 RLQALIKHISIRRLKDD 156
>SB_42678| Best HMM Match : Helicase_C (HMM E-Value=1.4e-24)
Length = 1058
Score = 54.0 bits (124), Expect = 1e-07
Identities = 31/86 (36%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Frame = +2
Query: 509 VLDLVDDILN-TSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTF 685
VLD + + TSDDK++LVS + + L +FE +Q+ + G + ++ R F
Sbjct: 420 VLDYILAVTKATSDDKVVLVSNYTQTLDLFEKLCRQRRYQHVRLDGSMSIKKRQKIVDRF 479
Query: 686 NNAADTQHRILLLSIKCGGVGLNLIG 763
N+ I +LS K GG GLNLIG
Sbjct: 480 NDPKGGDF-IFMLSSKAGGCGLNLIG 504
>SB_10642| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1023
Score = 47.6 bits (108), Expect = 1e-05
Identities = 27/83 (32%), Positives = 43/83 (51%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L + ++++ Q + I E++F K L G K EDR + FN
Sbjct: 517 LLDRILPKLKRNKHRVLMFCQMTSLMTILEDYFNWKGFPYLRLDGTTKSEDRGQLLSLFN 576
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
A D+ + + LLS + GG+GLNL
Sbjct: 577 -AKDSPYFVFLLSTRAGGLGLNL 598
>SB_248| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2656
Score = 46.0 bits (104), Expect = 3e-05
Identities = 28/93 (30%), Positives = 52/93 (55%), Gaps = 5/93 (5%)
Frame = +1
Query: 13 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKML---NKNNDSTNRIKSIIK 183
L +R +TGTP+ N +++S++NFL+ F + M K +++K ++K
Sbjct: 714 LQMEHRILLTGTPLQNNVEELFSLLNFLEPSQFPSQGAFLMEFGDLKTESQVDKLKQLLK 773
Query: 184 KIVLKRDKSEISFNI-PK-HTVEYVQLILMKKK 276
++L+R K ++ NI PK T+ V+L ++KK
Sbjct: 774 PMMLRRLKEDVEKNIAPKEETIIEVELTTVQKK 806
>SB_22405| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 764
Score = 45.2 bits (102), Expect = 6e-05
Identities = 29/86 (33%), Positives = 43/86 (50%)
Frame = +2
Query: 506 TVLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTF 685
TVL+ + + ++ + ++++LVS + + L I + K L G R F
Sbjct: 565 TVLNSMLEEIHCTGERVVLVSNYSQTLDILQKLCTVKKYRYLRLDGSTPTAKRQSLVERF 624
Query: 686 NNAADTQHRILLLSIKCGGVGLNLIG 763
N A Q + LLS K GGVGLNLIG
Sbjct: 625 N-AKHCQDFVFLLSSKAGGVGLNLIG 649
>SB_46182| Best HMM Match : Helicase_C (HMM E-Value=7.5e-22)
Length = 227
Score = 43.6 bits (98), Expect = 2e-04
Identities = 22/77 (28%), Positives = 38/77 (49%)
Frame = +2
Query: 527 DILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQ 706
+ L + K+++ S + +LKI+ ++ + N + TG K+ DR F D
Sbjct: 72 ETLLQAKQKVLIFSSYTSHLKIYTDWCDKNNTPYSLLTGSTKIADRESEVANFQK--DDN 129
Query: 707 HRILLLSIKCGGVGLNL 757
+ +S+K GG GLNL
Sbjct: 130 KLLFFISLKAGGTGLNL 146
>SB_31875| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1478
Score = 43.6 bits (98), Expect = 2e-04
Identities = 28/83 (33%), Positives = 42/83 (50%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L KI++ SQ + L I +++ + G +KVEDR F
Sbjct: 1201 LLDQMVPALKRRGHKILIFSQMTKMLDILQDYCYLRGYQYSRLDGSMKVEDRREEIDAF- 1259
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
A+D + I LLS + GG+GLNL
Sbjct: 1260 -ASDPEKFIFLLSTRAGGLGLNL 1281
Score = 31.9 bits (69), Expect = 0.61
Identities = 13/33 (39%), Positives = 22/33 (66%)
Frame = +1
Query: 19 ATNRWCITGTPIHNKHWDMYSMINFLQCRPFND 117
+ NR +TGTP+ N +++S++NFL F+D
Sbjct: 967 SANRLLLTGTPLQNNLAELWSLLNFLLPDIFDD 999
>SB_22404| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1918
Score = 41.5 bits (93), Expect = 7e-04
Identities = 37/142 (26%), Positives = 60/142 (42%), Gaps = 5/142 (3%)
Frame = +2
Query: 353 HAKPIAANAARVMANTEIEANLLPPV-FGHAR*KS----FGNKRLF*NGLYEQQVQTVLD 517
H P N ++MA + ++ L+P F H + F RL Y+ LD
Sbjct: 1373 HPPPHLVNTNKIMAES-LQKELMPKTSFMHPISRGMTVQFPEARLI---QYDCGKLQTLD 1428
Query: 518 LVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAA 697
+ L ++++ +Q L + E F L G +VE R + FN A
Sbjct: 1429 NLLRRLKAGKHRVLIFTQMTRMLDVLEKFLNYHGYVYLRLDGSTRVEQRQILMDRFN--A 1486
Query: 698 DTQHRILLLSIKCGGVGLNLIG 763
D++ +LS + GG+G+NL G
Sbjct: 1487 DSRIFCFILSTRSGGLGVNLTG 1508
>SB_30389| Best HMM Match : Helicase_C (HMM E-Value=3.3e-21)
Length = 380
Score = 41.1 bits (92), Expect = 0.001
Identities = 24/69 (34%), Positives = 36/69 (52%)
Frame = +2
Query: 551 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 730
K ++VSQ+ +L I E F ++ I L G + E R+ F + ++ LLS+
Sbjct: 163 KSLVVSQFTSFLDILEYFLERDGIDYLRLDGTMGQEARVKVIDRFRDPDSP--KVFLLSL 220
Query: 731 KCGGVGLNL 757
GGVGLNL
Sbjct: 221 TAGGVGLNL 229
>SB_35930| Best HMM Match : SNF2_N (HMM E-Value=1.3004e-42)
Length = 784
Score = 39.5 bits (88), Expect = 0.003
Identities = 27/85 (31%), Positives = 37/85 (43%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
VLD + + K++L S E L I EN+ + + GQ R+ FN
Sbjct: 443 VLDKLLRMFEKDKCKVLLFSYSTELLNILENYVIGRGLVFSRLDGQTSPAQRMRVVREFN 502
Query: 689 NAADTQHRILLLSIKCGGVGLNLIG 763
D I L+S K GG+GLN G
Sbjct: 503 GNRDI--FICLVSTKAGGLGLNFTG 525
>SB_31213| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 919
Score = 38.3 bits (85), Expect = 0.007
Identities = 24/84 (28%), Positives = 38/84 (45%)
Frame = +2
Query: 506 TVLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTF 685
TVLD + L ++++ SQ + I E + + + G K+ DR F
Sbjct: 598 TVLDGLLTKLKLQGHRVLIYSQMTRMIDILEEYMTFRKHKYMRLDGSSKISDRRDMVADF 657
Query: 686 NNAADTQHRILLLSIKCGGVGLNL 757
N D + LLS + GG+G+NL
Sbjct: 658 QNNKDIF--VFLLSTRAGGLGINL 679
Score = 31.1 bits (67), Expect = 1.1
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Frame = +1
Query: 25 NRWCITGTPIHNKHWDMYSMINFLQCRPF-NDPRVWKMLNKNNDSTNRIKSIIKKIVLKR 201
NR +TGTPI N +++++++F+ F N + +K+ +S KS+I + L R
Sbjct: 188 NRLLLTGTPIQNSMAELWALLHFIMPTLFDNHEEFNEWFSKDIESHAENKSLIDQNQLSR 247
>SB_46817| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 470
Score = 37.9 bits (84), Expect = 0.009
Identities = 23/86 (26%), Positives = 45/86 (52%)
Frame = +1
Query: 13 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTNRIKSIIKKIV 192
L + NR +TGTP+ N ++++++NFL F+ V + R+KS ++K +
Sbjct: 200 LRSANRLLLTGTPLQNNLHELWALLNFLLPDVFSSSDVLRPF-----LLRRLKSDVEKRL 254
Query: 193 LKRDKSEISFNIPKHTVEYVQLILMK 270
L + ++++ + K + ILMK
Sbjct: 255 LPKKETKVYTGLTKMQRSWYTKILMK 280
>SB_621| Best HMM Match : SNF2_N (HMM E-Value=0)
Length = 1432
Score = 35.9 bits (79), Expect = 0.037
Identities = 21/75 (28%), Positives = 38/75 (50%)
Frame = +2
Query: 533 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 712
L + ++++ SQ V L I ++ +Q+ G ++ + R A FN A ++
Sbjct: 416 LKETGHRVLIFSQMVRMLDILADYLQQRRFLFQRLDGSIRGDLRKQALDHFN-AEGSEDF 474
Query: 713 ILLLSIKCGGVGLNL 757
LLS + GG+G+NL
Sbjct: 475 CFLLSTRAGGLGINL 489
Score = 33.5 bits (73), Expect = 0.20
Identities = 16/90 (17%), Positives = 50/90 (55%), Gaps = 4/90 (4%)
Frame = +1
Query: 25 NRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTNR-IKSIIKKI---V 192
+R +TGTP+ N +++++++FL F+ ++ ++ + ++ S+ K++ +
Sbjct: 253 HRLLVTGTPLQNSLKELWALLHFLMPERFSSWEAFEQIHSTQEQKDKGFASLHKELEPFL 312
Query: 193 LKRDKSEISFNIPKHTVEYVQLILMKKKKR 282
L+R K ++ ++P + +++ + +K+
Sbjct: 313 LRRVKKDVEKSLPAKVEQILRVEMSSLQKQ 342
>SB_56356| Best HMM Match : Helicase_C (HMM E-Value=1.3e-21)
Length = 149
Score = 33.5 bits (73), Expect = 0.20
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Frame = +2
Query: 542 SDDKIILVSQWVEYLKIFENFFKQKNIATLMYT---GQLKVEDRILAETTFNNAADTQHR 712
S +++L Q L I EN + N+ ++ Y G R FNN D
Sbjct: 26 SQHRVLLFCQLKSMLDIVENDLFKTNMPSVTYLRLDGSTPAGSRHSIVHRFNN--DPSID 83
Query: 713 ILLLSIKCGGVGLNLIG 763
+LLL+ GG+GLNL G
Sbjct: 84 VLLLTTHVGGLGLNLTG 100
>SB_47493| Best HMM Match : Helicase_C (HMM E-Value=1.3e-16)
Length = 252
Score = 32.7 bits (71), Expect = 0.35
Identities = 18/40 (45%), Positives = 24/40 (60%)
Frame = +2
Query: 641 GQLKVEDRILAETTFNNAADTQHRILLLSIKCGGVGLNLI 760
G ++ E+R +A FN D + I LLS K GG GLNL+
Sbjct: 40 GSVRGEERYIAIKNFNEEQD--NFIFLLSTKAGGQGLNLM 77
>SB_2026| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1789
Score = 31.9 bits (69), Expect = 0.61
Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 5/85 (5%)
Frame = +1
Query: 37 ITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKN---NDSTNRIKSIIKKIVLKRDK 207
+TGTP+ N ++++++ FL FN+ + N D ++ I+ +L+R K
Sbjct: 812 LTGTPLQNNLEELWNLLFFLDPVEFNNKNNFLTEFDNVAKEDQIKKLHDILGPHMLRRLK 871
Query: 208 SEISFNIPKHT--VEYVQLILMKKK 276
+++ IP + + V+L M+KK
Sbjct: 872 ADVLKGIPSKSELIVRVELSPMQKK 896
Score = 31.1 bits (67), Expect = 1.1
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +2
Query: 533 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 712
L ++++ SQ L + E+F + G + R A FN A +Q
Sbjct: 973 LREQGHRVLIFSQMTRMLDLLEDFLEGHGYKYERIDGSVNGAARQEAIDRFN-APTSQAF 1031
Query: 713 ILLLSIKCGGVGLNL 757
LLS + GG+G+NL
Sbjct: 1032 CFLLSTRAGGLGINL 1046
>SB_56223| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1719
Score = 30.7 bits (66), Expect = 1.4
Identities = 18/66 (27%), Positives = 36/66 (54%)
Frame = +3
Query: 264 NEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYLAMH 443
N+ E+ L+ +L E + Y + + +RE ++ L+ + V ++ LR+IC HP L
Sbjct: 686 NKNEQVLFCRLSDEQRQLYEQYLDSREVQSILAGKYK---VFPGLIMLRKICNHPDLTSE 742
Query: 444 GRNLLE 461
+L++
Sbjct: 743 AGSLIK 748
>SB_10552| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 442
Score = 30.3 bits (65), Expect = 1.8
Identities = 18/59 (30%), Positives = 31/59 (52%)
Frame = -2
Query: 491 HIIHFKTVVCFQKISTVHGQIRVAADLPQFQY*P*HVLHLLQSA*RVFAFTRCHSFHIR 315
HI H Q+ TVH + + A L Q +Y H+ H+L++ + +TR ++ HI+
Sbjct: 198 HIKHMLRATLKQRKYTVHIKHMLRATLKQRKY-TVHIKHMLRATLKQRKYTRKYTVHIK 255
>SB_54764| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 29.9 bits (64), Expect = 2.4
Identities = 10/43 (23%), Positives = 23/43 (53%)
Frame = +3
Query: 306 SEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 434
S ++ + + ++ +N S + QH++W L + ++C YL
Sbjct: 101 SRDSTVHDIPQQQVDNLFSAVGPFQHIVWFTLSVAKVCLTKYL 143
>SB_53475| Best HMM Match : PAN (HMM E-Value=0.00029)
Length = 431
Score = 29.5 bits (63), Expect = 3.2
Identities = 19/55 (34%), Positives = 22/55 (40%), Gaps = 6/55 (10%)
Frame = -3
Query: 454 RFLPCMAKYGWQQICLNFSISHNTC------CICCNRLSVFSLSRAATAFIYASS 308
R P M YG +QICLN I + C CIC + TA I S
Sbjct: 141 RLSPAMNHYGTEQICLNGGIVDHACVENELRCICLPEWTGSDCGLGQTAVILTPS 195
>SB_39230| Best HMM Match : SNF2_N (HMM E-Value=1.40004e-41)
Length = 1682
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +2
Query: 641 GQLKVEDRILAETTFNNAADTQHRILLLSIKCGGVGLNLI 760
G V+ R FN+ + R+ L+S K GG+G+NL+
Sbjct: 1236 GSTSVQLRQRWADIFNDPDNKTARLFLISTKAGGLGINLV 1275
>SB_56487| Best HMM Match : ATP-synt_B (HMM E-Value=1.9)
Length = 153
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Frame = +2
Query: 497 QVQTVLDLVDDILNTSDDKIILVSQWVEY 583
++ T+ +VDDI DD + LVS ++Y
Sbjct: 88 EITTIKQMVDDIAPAGDDSMALVSLDIQY 116
>SB_6207| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 365
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 660 TGFWPRRHSIMLPILNIEFCC 722
TGFW +R LP LN F C
Sbjct: 49 TGFWDKRQKGELPALNFAFHC 69
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,924,421
Number of Sequences: 59808
Number of extensions: 472032
Number of successful extensions: 1459
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1454
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -