Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120298.Seq
(786 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g05130.1 68418.m00544 SNF2 domain-containing protein / helica... 63 2e-10
At5g22750.1 68418.m02657 SNF2 domain-containing protein / helica... 59 3e-09
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 51 1e-06
At1g11100.1 68414.m01271 SNF2 domain-containing protein / helica... 50 2e-06
At1g61140.1 68414.m06888 SNF2 domain-containing protein / helica... 48 5e-06
At1g50410.1 68414.m05650 SNF2 domain-containing protein / helica... 48 7e-06
At1g05120.1 68414.m00514 SNF2 domain-containing protein / helica... 48 7e-06
At3g16600.1 68416.m02122 SNF2 domain-containing protein / helica... 47 1e-05
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 47 1e-05
At5g66750.1 68418.m08414 SNF2 domain-containing protein / helica... 47 2e-05
At2g02090.1 68415.m00145 SNF2 domain-containing protein / helica... 46 3e-05
At3g20010.1 68416.m02531 SNF2 domain-containing protein / helica... 46 4e-05
At3g19210.1 68416.m02438 DNA repair protein RAD54, putative simi... 45 7e-05
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ... 43 3e-04
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ... 43 3e-04
At2g44980.1 68415.m05600 transcription regulatory protein SNF2, ... 43 3e-04
At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar ... 42 4e-04
At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar ... 42 4e-04
At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar ... 42 5e-04
At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding famil... 41 0.001
At2g28290.2 68415.m03434 chromatin remodeling protein, putative ... 40 0.001
At2g28290.1 68415.m03433 chromatin remodeling protein, putative ... 40 0.001
At3g06010.1 68416.m00686 homeotic gene regulator, putative simil... 40 0.002
At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468... 40 0.002
At5g19310.1 68418.m02301 homeotic gene regulator, putative simil... 39 0.003
At3g57300.1 68416.m06378 transcriptional activator, putative sim... 39 0.004
At2g18760.1 68415.m02184 SNF2 domain-containing protein / helica... 38 0.010
At2g44980.2 68415.m05601 transcription regulatory protein SNF2, ... 37 0.013
At1g02670.1 68414.m00217 DNA repair protein, putative similar to... 37 0.017
At4g31900.1 68417.m04533 chromatin remodeling factor, putative s... 36 0.040
At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding famil... 35 0.053
At3g12810.1 68416.m01598 SNF2 domain-containing protein / helica... 32 0.38
At3g54280.1 68416.m05999 SNF2 domain-containing protein / helica... 32 0.50
At2g16370.1 68415.m01873 bifunctional dihydrofolate reductase-th... 32 0.50
At4g34570.1 68417.m04912 bifunctional dihydrofolate reductase-th... 31 0.87
At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKL... 31 0.87
At1g17120.1 68414.m02086 amino acid permease family protein low ... 31 0.87
At3g54460.1 68416.m06025 SNF2 domain-containing protein / helica... 31 1.1
At2g43650.1 68415.m05425 Sas10/U3 ribonucleoprotein (Utp) family... 29 2.6
At1g36675.1 68414.m04563 glycine-rich protein 29 2.6
At1g72540.1 68414.m08388 protein kinase, putative similar to aux... 29 3.5
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 29 4.6
At1g79680.1 68414.m09293 wall-associated kinase, putative simila... 28 8.1
>At5g05130.1 68418.m00544 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 862
Score = 62.9 bits (146), Expect = 2e-10
Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 8/92 (8%)
Frame = +1
Query: 7 CALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKML------NKNNDSTNRI 168
C L A+ RW +TGTPI N +D+YS++ FL+ PF+ W+ L N +R+
Sbjct: 435 CKLKASRRWAVTGTPIQNGSFDLYSLMAFLRFEPFSIKSYWQSLIQRPLGQGNKKGLSRL 494
Query: 169 KSIIKKIVLKRDKSEISFNIPKHTVE--YVQL 258
+ ++ I L+R K + +P TVE YV+L
Sbjct: 495 QVLMATISLRRTKEKSLIGLPPKTVETCYVEL 526
Score = 34.7 bits (76), Expect = 0.070
Identities = 21/69 (30%), Positives = 31/69 (44%)
Frame = +2
Query: 551 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 730
K ++ SQ+ + L + E K L G + V+ R F N T +LL S+
Sbjct: 708 KSVVFSQFRKMLLLLETPLKAAGFTILRLDGAMTVKKRTQVIGEFGNPELTGPVVLLASL 767
Query: 731 KCGGVGLNL 757
K G G+NL
Sbjct: 768 KASGTGINL 776
Score = 31.9 bits (69), Expect = 0.50
Identities = 18/57 (31%), Positives = 30/57 (52%)
Frame = +3
Query: 249 CTVNFNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQIC 419
C V + EE+ LYD ++ E++ + N S ++ VL +IL+LRQ+C
Sbjct: 522 CYVELSPEERQLYDHMEGEAKGVVQNLI------NNGSLMRNYSTVLSIILRLRQLC 572
>At5g22750.1 68418.m02657 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1029
Score = 59.3 bits (137), Expect = 3e-09
Identities = 31/76 (40%), Positives = 45/76 (59%), Gaps = 6/76 (7%)
Frame = +1
Query: 1 AACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVW-KMLNK-----NNDSTN 162
AA AL A RWC+TGTPI N D+YS++ FL+ P+ W K++ K +
Sbjct: 588 AAAALVADRRWCLTGTPIQNNLEDLYSLLRFLRIEPWGTWAWWNKLVQKPFEEGDERGLK 647
Query: 163 RIKSIIKKIVLKRDKS 210
++SI+K I+L+R KS
Sbjct: 648 LVQSILKPIMLRRTKS 663
Score = 44.4 bits (100), Expect = 9e-05
Identities = 27/93 (29%), Positives = 47/93 (50%)
Frame = +2
Query: 479 NGLYEQQVQTVLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVE 658
N + ++ +L+ ++ L +S K IL SQW +L + + + N + + G L +
Sbjct: 858 NWVESSKITALLEELEG-LRSSGSKSILFSQWTAFLDLLQIPLSRNNFSFVRLDGTLSQQ 916
Query: 659 DRILAETTFNNAADTQHRILLLSIKCGGVGLNL 757
R F+ D +LL+S+K GGVG+NL
Sbjct: 917 QREKVLKEFSE--DGSILVLLMSLKAGGVGINL 947
Score = 35.1 bits (77), Expect = 0.053
Identities = 26/88 (29%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +3
Query: 243 RVCTVNFNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICC 422
RV +E E+ YD L S+ + + V + L +L L+L+LRQ C
Sbjct: 681 RVIYCELSESERDFYDALFKRSKVKFDQFVEQGKV------LHNYASILELLLRLRQCCD 734
Query: 423 HPYLAMHGRNLLETNDCFKMD--YMSSK 500
HP+L M + E +D K+ ++S K
Sbjct: 735 HPFLVMSRGDTAEYSDLNKLSKRFLSGK 762
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger domain-containing
protein similar to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 1277
Score = 50.8 bits (116), Expect = 1e-06
Identities = 28/75 (37%), Positives = 45/75 (60%), Gaps = 6/75 (8%)
Frame = +1
Query: 1 AACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVW-KMLNK---NND--STN 162
A L++ RWC+TGTP+ NK D+YS++ FL P+ + W K++ K N D
Sbjct: 837 ATFELSSHCRWCLTGTPLQNKLEDLYSLLCFLHVEPWCNWAWWSKLIQKPYENGDPRGLK 896
Query: 163 RIKSIIKKIVLKRDK 207
IK+I++ ++L+R K
Sbjct: 897 LIKAILRPLMLRRTK 911
Score = 48.8 bits (111), Expect = 4e-06
Identities = 30/88 (34%), Positives = 47/88 (53%), Gaps = 1/88 (1%)
Frame = +2
Query: 497 QVQTVLDLVDDILNT-SDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILA 673
+V +L ++ I + S +K I+ SQW +L + E +++ L + G+L + R
Sbjct: 1110 KVSELLKCLEKIKKSGSGEKSIVFSQWTSFLDLLEIPLRRRGFEFLRFDGKLAQKGREKV 1169
Query: 674 ETTFNNAADTQHRILLLSIKCGGVGLNL 757
FN Q ILL+S+K GGVGLNL
Sbjct: 1170 LKEFNETK--QKTILLMSLKAGGVGLNL 1195
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = +3
Query: 366 LQQMQHVLWLILKLRQICCHPYLAM 440
L ++L L+L+LRQ C HP+L M
Sbjct: 965 LHNYANILELLLRLRQCCNHPFLVM 989
>At1g11100.1 68414.m01271 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to RUSH-1alpha [Oryctolagus cuniculus]
GI:1655930; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1226
Score = 49.6 bits (113), Expect = 2e-06
Identities = 26/78 (33%), Positives = 44/78 (56%), Gaps = 7/78 (8%)
Frame = +1
Query: 4 ACA-LTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKN------NDSTN 162
AC+ L A RWC++GTPI N D+YS FL+ P++ + + KN +
Sbjct: 735 ACSGLHAKRRWCLSGTPIQNSIADLYSYFRFLKYDPYSSYQTFCETIKNPISSYPGEGYK 794
Query: 163 RIKSIIKKIVLKRDKSEI 216
+++I+KK++L+R K +
Sbjct: 795 TLQAILKKVMLRRTKDTL 812
Score = 47.6 bits (108), Expect = 9e-06
Identities = 23/84 (27%), Positives = 42/84 (50%)
Frame = +2
Query: 521 VDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAAD 700
V ++N + +K I+ +QW + L + E K I + G++ V R A FN D
Sbjct: 1063 VGGVVNVAGEKAIVFTQWTKMLDLLEAGLKSSGIQYRRFDGKMTVPARDAAVQDFNTLPD 1122
Query: 701 TQHRILLLSIKCGGVGLNLIGEPH 772
++++S+K +GLN++ H
Sbjct: 1123 VS--VMIMSLKAASLGLNMVAACH 1144
Score = 40.7 bits (91), Expect = 0.001
Identities = 21/60 (35%), Positives = 35/60 (58%)
Frame = +3
Query: 255 VNFNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 434
V+F +EE+ Y KL+C+S + + + A T+ Q ++L ++L+LRQ C HP L
Sbjct: 831 VDFTKEERDFYSKLECDSRDQFKEYAEA----GTVK--QNYVNILLMLLRLRQACGHPLL 884
>At1g61140.1 68414.m06888 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger protein-related
similar to ATPase [Homo sapiens] GI:531196; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 1287
Score = 48.4 bits (110), Expect = 5e-06
Identities = 27/78 (34%), Positives = 43/78 (55%), Gaps = 7/78 (8%)
Frame = +1
Query: 4 AC-ALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTNRIK--- 171
AC L A RWC++GTPI N D+YS FL+ P++ ++ KN + N +K
Sbjct: 815 ACWGLRAKRRWCLSGTPIQNSIDDLYSYFRFLKYDPYSSYVLFCSTIKNPITRNPVKGYQ 874
Query: 172 ---SIIKKIVLKRDKSEI 216
+I+K ++L+R K +
Sbjct: 875 KLQAILKTVMLRRTKGSL 892
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/84 (26%), Positives = 39/84 (46%)
Frame = +2
Query: 521 VDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAAD 700
VD + + +K I+ SQW + L + E +I G + V R A FN +
Sbjct: 1122 VDVPIKVAGEKAIVFSQWTKMLNLLEASLVSSHIQYRRLDGTMSVAARDKAVQDFNTLPE 1181
Query: 701 TQHRILLLSIKCGGVGLNLIGEPH 772
++++S+K +GLN++ H
Sbjct: 1182 V--TVMIMSLKAASLGLNMVAACH 1203
Score = 36.3 bits (80), Expect = 0.023
Identities = 21/60 (35%), Positives = 31/60 (51%)
Frame = +3
Query: 255 VNFNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 434
V+F EE+ Y KL+ ES + RE + Q ++L ++L+LRQ C HP L
Sbjct: 911 VDFTVEERDFYSKLEAESRTQF------REYAEAGTVKQNYVNILLMLLRLRQACDHPLL 964
>At1g50410.1 68414.m05650 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 981
Score = 48.0 bits (109), Expect = 7e-06
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 11/97 (11%)
Frame = +1
Query: 1 AACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTN------ 162
A C L A RWC++GTPI N D+YS FL+ P+ + + K S N
Sbjct: 492 ACCGLRAKRRWCLSGTPIQNTIDDLYSYFRFLKYDPYAVYKSFCHQIKGPISRNSLQGYK 551
Query: 163 RIKSIIKKIVLKRDKSEI-----SFNIPKHTVEYVQL 258
+++++++ I+L+R K + N+P T+ Q+
Sbjct: 552 KLQAVLRAIMLRRTKGTLLDGQPIINLPPKTINLSQV 588
Score = 39.1 bits (87), Expect = 0.003
Identities = 23/60 (38%), Positives = 36/60 (60%)
Frame = +3
Query: 255 VNFNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 434
V+F+ EE++ Y KL+ +S + KA AA + N Q ++L ++L+LRQ C HP L
Sbjct: 588 VDFSVEERSFYVKLESDSRSQF-KAYAAAGTLN-----QNYANILLMLLRLRQACDHPQL 641
Score = 39.1 bits (87), Expect = 0.003
Identities = 22/74 (29%), Positives = 37/74 (50%)
Frame = +2
Query: 551 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 730
K I+ SQW L + E + +I G + + R A F+N D +++++S+
Sbjct: 828 KTIIFSQWTGMLDLVELSLIENSIEFRRLDGTMSLIARDRAVKEFSNDPDV--KVMIMSL 885
Query: 731 KCGGVGLNLIGEPH 772
K G +GLN+I H
Sbjct: 886 KAGNLGLNMIAACH 899
>At1g05120.1 68414.m00514 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P79051 DNA
repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00097: Zinc finger,
C3HC4 type (RING finger)
Length = 833
Score = 48.0 bits (109), Expect = 7e-06
Identities = 19/38 (50%), Positives = 28/38 (73%)
Frame = +1
Query: 1 AACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFN 114
A AL AT RW ++GTP+ N+ ++YS+I FLQ RP++
Sbjct: 375 AVFALEATYRWALSGTPLQNRVGELYSLIRFLQIRPYS 412
Score = 35.9 bits (79), Expect = 0.030
Identities = 21/74 (28%), Positives = 34/74 (45%)
Frame = +2
Query: 551 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 730
K I+ SQ+ +L + + ++ + G + + R A F D R+ L+S+
Sbjct: 682 KAIVFSQFTSFLDLINYTLGKCGVSCVQLVGSMTMAARDTAINKFKEDPDC--RVFLMSL 739
Query: 731 KCGGVGLNLIGEPH 772
K GGV LNL H
Sbjct: 740 KAGGVALNLTVASH 753
>At3g16600.1 68416.m02122 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P31244 DNA
repair protein RAD16 {Saccharomyces cerevisiae};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 638
Score = 47.2 bits (107), Expect = 1e-05
Identities = 30/80 (37%), Positives = 46/80 (57%), Gaps = 7/80 (8%)
Frame = +1
Query: 4 AC-ALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFN-----DPRVWKMLNKNN-DSTN 162
AC +L A RWC+TGTPI NK D+YS FL+ P+ R+ ++K
Sbjct: 234 ACFSLRAKRRWCLTGTPIKNKVDDLYSYFRFLRYHPYAMCNSFHQRIKAPIDKKPLHGYK 293
Query: 163 RIKSIIKKIVLKRDKSEISF 222
++++I++ I+L+R K E SF
Sbjct: 294 KLQAILRGIMLRRTK-EWSF 312
Score = 27.9 bits (59), Expect = 8.1
Identities = 18/55 (32%), Positives = 30/55 (54%)
Frame = +3
Query: 270 EEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 434
+E + Y KL+ S + + A + TL + M ++L ++L+LRQ C HP L
Sbjct: 308 KEWSFYRKLELNSRWKFEEYAA----DGTLH--EHMAYLLVMLLRLRQACNHPQL 356
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 47.2 bits (107), Expect = 1e-05
Identities = 19/42 (45%), Positives = 26/42 (61%)
Frame = +1
Query: 4 ACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVW 129
A L +RWCITGTPI K D++ ++ FL+ PF+ R W
Sbjct: 606 ALRLYTKHRWCITGTPIQRKLDDLFGLLKFLKANPFDVSRWW 647
Score = 31.9 bits (69), Expect = 0.50
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +3
Query: 345 SENTLSRLQQMQHVLWLILKLRQICCHPYLAMHGRNLLE 461
S+N L + +L +LKLRQ CCHP + G L+
Sbjct: 738 SDNPLVTHAEAAKLLNSLLKLRQACCHPQVGSSGLRSLQ 776
Score = 31.1 bits (67), Expect = 0.87
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 9/83 (10%)
Frame = +2
Query: 551 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILA------ETTFNNAADTQHR 712
K+++ S W + L + E+ F +I + G K + I ET N+ + +
Sbjct: 1435 KVLVFSSWNDVLDVLEHAFAANSITCIRMKGGRKSQTAISKFKGSEKETQKTNSHQKEEK 1494
Query: 713 ---ILLLSIKCGGVGLNLIGEPH 772
+LLL ++ G GLNL+ H
Sbjct: 1495 SIQVLLLLVQHGANGLNLLEAQH 1517
>At5g66750.1 68418.m08414 SNF2 domain-containing protein / helicase
domain-containing protein similar to
proliferation-associated SNF2-like protein [Homo
sapiens] GI:8980660; contains Pfam profiles PF00271:
Helicase conserved C-terminal domain, PF00176: SNF2
family N-terminal domain
Length = 764
Score = 46.8 bits (106), Expect = 2e-05
Identities = 23/81 (28%), Positives = 42/81 (51%)
Frame = +2
Query: 533 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 712
L ++ K+++ SQW + L I + +F +K G +K+++R F++ +
Sbjct: 536 LFANNHKVLIFSQWTKLLDIMDYYFSEKGFEVCRIDGSVKLDERRRQIKDFSDEKSSCS- 594
Query: 713 ILLLSIKCGGVGLNLIGEPHC 775
I LLS + GG+G+NL C
Sbjct: 595 IFLLSTRAGGLGINLTAADTC 615
Score = 29.1 bits (62), Expect = 3.5
Identities = 25/107 (23%), Positives = 52/107 (48%), Gaps = 19/107 (17%)
Frame = +1
Query: 13 LTATNRWCITGTPIHNKHWDMYSMINFLQCRPF---NDPRVW-KMLNKN-NDST------ 159
L N+ +TGTP+ N +++S++NF+ F ++ W KN N++T
Sbjct: 352 LKMDNKLLLTGTPLQNNLSELWSLLNFILPDIFTSHDEFESWFDFSEKNKNEATKEEEEK 411
Query: 160 ------NRIKSIIKKIVLKRDKSEISFNIP--KHTVEYVQLILMKKK 276
+++ I++ +L+R K ++ ++P K + Y + +KK
Sbjct: 412 RRAQVVSKLHGILRPFILRRMKCDVELSLPRKKEIIMYATMTDHQKK 458
>At2g02090.1 68415.m00145 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 763
Score = 46.0 bits (104), Expect = 3e-05
Identities = 29/94 (30%), Positives = 55/94 (58%), Gaps = 4/94 (4%)
Frame = +1
Query: 10 ALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRV--WKMLN-KNNDSTNRIKSII 180
A A R +TGTP+ N +++S++ F+ F V K+LN ++ + R+KSI+
Sbjct: 373 ARNANQRLMLTGTPLQNDLHELWSLLEFMLPDIFTTENVDLKKLLNAEDTELITRMKSIL 432
Query: 181 KKIVLKRDKSEISFN-IPKHTVEYVQLILMKKKK 279
+L+R KS++ +PK ++ V+ +LM++K+
Sbjct: 433 GPFILRRLKSDVMQQLVPK--IQRVEYVLMERKQ 464
Score = 41.9 bits (94), Expect = 5e-04
Identities = 28/87 (32%), Positives = 40/87 (45%)
Frame = +2
Query: 503 QTVLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETT 682
+T+ +L+ + S ++++ SQW L I E + G +V DR T
Sbjct: 591 RTLAELLPS-MKKSGHRVLIFSQWTSMLDILEWTLDVIGVTYRRLDGSTQVTDRQTIVDT 649
Query: 683 FNNAADTQHRILLLSIKCGGVGLNLIG 763
FNN D LLS + GG GLNL G
Sbjct: 650 FNN--DKSIFACLLSTRAGGQGLNLTG 674
>At3g20010.1 68416.m02531 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to transcription
factor RUSH-1alpha [Oryctolagus cuniculus] GI:1655930;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1047
Score = 45.6 bits (103), Expect = 4e-05
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Frame = +1
Query: 1 AACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTN------ 162
+ C L A RWC++GTPI N D+YS FL+ P+ + + K S N
Sbjct: 563 SCCTLRAKRRWCLSGTPIQNTIDDLYSYFRFLRYDPYAVYKSFYSTIKVPISRNSCQGYK 622
Query: 163 RIKSIIKKIVLKRDKSEI 216
+++++++ I+L+R K +
Sbjct: 623 KLQAVLRAIMLRRTKGTL 640
Score = 37.9 bits (84), Expect = 0.008
Identities = 24/60 (40%), Positives = 35/60 (58%)
Frame = +3
Query: 255 VNFNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 434
V+F+ E++ Y KL+ +S + KA A TLS Q ++L L+L+LRQ C HP L
Sbjct: 659 VDFSVAERSFYKKLEADSRSQF-KAYA---DAGTLS--QNYANILLLLLRLRQACDHPQL 712
>At3g19210.1 68416.m02438 DNA repair protein RAD54, putative similar
to RAD54 GB:CAA71278 from [Drosophila melanogaster]
(Mol. Cell. Biol.(1997) 17 (10), 6097-6104)
Length = 852
Score = 44.8 bits (101), Expect = 7e-05
Identities = 25/82 (30%), Positives = 40/82 (48%)
Frame = +2
Query: 518 LVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAA 697
L+ ++ +DD+I+LVS + + L +F +++ L G + R N+
Sbjct: 438 LLANLRRKTDDRIVLVSNYTQTLDLFAQLCRERRYPFLRLDGSTTISKRQKLVNRLNDPT 497
Query: 698 DTQHRILLLSIKCGGVGLNLIG 763
+ LLS K GG GLNLIG
Sbjct: 498 KDEF-AFLLSSKAGGCGLNLIG 518
Score = 28.3 bits (60), Expect = 6.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 1 AACALTATNRWCITGTPIHNKHWDMYSMINF 93
A +LT R ++GTP+ N + ++M+NF
Sbjct: 233 ALASLTCKRRVLLSGTPMQNDLEEFFAMVNF 263
>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2193
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/83 (32%), Positives = 41/83 (49%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L + +++L S + L I E + + + + G +EDR A FN
Sbjct: 1312 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFN 1371
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
+ DT I LLSI+ G GLNL
Sbjct: 1372 D-PDTDCFIFLLSIRAAGRGLNL 1393
>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
putative similar to SP|P22082 Transcription regulatory
protein SNF2 (SWI/SNF complex component SNF2)
{Saccharomyces cerevisiae}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 2192
Score = 42.7 bits (96), Expect = 3e-04
Identities = 27/83 (32%), Positives = 41/83 (49%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L + +++L S + L I E + + + + G +EDR A FN
Sbjct: 1311 ILDRILIKLQRTGHRVLLFSTMTKLLDILEEYLQWRRLVYRRIDGTTSLEDRESAIVDFN 1370
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
+ DT I LLSI+ G GLNL
Sbjct: 1371 D-PDTDCFIFLLSIRAAGRGLNL 1392
>At2g44980.1 68415.m05600 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 851
Score = 42.7 bits (96), Expect = 3e-04
Identities = 24/84 (28%), Positives = 43/84 (51%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
VLD + L+ S +++L SQ L I ++F + + + G ++ E+R A F+
Sbjct: 372 VLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFS 431
Query: 689 NAADTQHRILLLSIKCGGVGLNLI 760
+ ++S + GGVGLNL+
Sbjct: 432 VDGSNAF-VFMISTRAGGVGLNLV 454
>At5g18620.2 68418.m02206 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1072
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Frame = +1
Query: 13 LTATN-RWCITGTPIHNKHWDMYSMINFLQCRPFNDPRV---WKMLNKNNDS---TNRIK 171
L +TN R ITGTP+ N ++++++NFL F+ W ++ ND ++
Sbjct: 340 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQISGENDQQEVVQQLH 399
Query: 172 SIIKKIVLKRDKSEISFNIP--KHTVEYVQLILMKKK 276
+++ +L+R KS++ +P K T+ V + M+K+
Sbjct: 400 KVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQ 436
Score = 35.5 bits (78), Expect = 0.040
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L D ++++ SQ L I E++ + G ++R + +N
Sbjct: 499 LLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYN 558
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
+ + LLS + GG+G+NL
Sbjct: 559 KPGSEKF-VFLLSTRAGGLGINL 580
>At5g18620.1 68418.m02205 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1069
Score = 42.3 bits (95), Expect = 4e-04
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Frame = +1
Query: 13 LTATN-RWCITGTPIHNKHWDMYSMINFLQCRPFNDPRV---WKMLNKNNDS---TNRIK 171
L +TN R ITGTP+ N ++++++NFL F+ W ++ ND ++
Sbjct: 340 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEVFSSAETFDEWFQISGENDQQEVVQQLH 399
Query: 172 SIIKKIVLKRDKSEISFNIP--KHTVEYVQLILMKKK 276
+++ +L+R KS++ +P K T+ V + M+K+
Sbjct: 400 KVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQ 436
Score = 35.5 bits (78), Expect = 0.040
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L D ++++ SQ L I E++ + G ++R + +N
Sbjct: 499 LLDKLLPKLKDRDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGDERDASIEAYN 558
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
+ + LLS + GG+G+NL
Sbjct: 559 KPGSEKF-VFLLSTRAGGLGINL 580
>At3g06400.1 68416.m00738 DNA-dependent ATPase, putative similar to
DNA-dependent ATPase SNF2H [Mus musculus] GI:14028669;
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00249: Myb-like DNA-binding domain
Length = 1055
Score = 41.9 bits (94), Expect = 5e-04
Identities = 27/97 (27%), Positives = 52/97 (53%), Gaps = 9/97 (9%)
Frame = +1
Query: 13 LTATN-RWCITGTPIHNKHWDMYSMINFLQCRPFNDPRV---WKMLNKNNDS---TNRIK 171
L +TN R ITGTP+ N ++++++NFL F+ W ++ ND ++
Sbjct: 335 LFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLH 394
Query: 172 SIIKKIVLKRDKSEISFNIP--KHTVEYVQLILMKKK 276
+++ +L+R KS++ +P K T+ V + M+K+
Sbjct: 395 KVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQ 431
Score = 35.5 bits (78), Expect = 0.040
Identities = 20/83 (24%), Positives = 38/83 (45%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L D ++++ SQ L I E++ + G ++R + +N
Sbjct: 494 LLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDERDASIEAYN 553
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
+ + LLS + GG+G+NL
Sbjct: 554 KPGSEKF-VFLLSTRAGGLGINL 575
>At5g44800.1 68418.m05492 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to chromatin
remodeling factor CHD3 (PICKLE) [Arabidopsis thaliana]
GI:6478518; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00628: PHD-finger, PF00385: 'chromo'
(CHRromatin Organization MOdifier)
Length = 2228
Score = 40.7 bits (91), Expect = 0.001
Identities = 26/85 (30%), Positives = 45/85 (52%), Gaps = 5/85 (5%)
Frame = +1
Query: 25 NRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTN-----RIKSIIKKI 189
+R +TGTP+ N +MY+++NFLQ P + P + + +D T+ +K ++
Sbjct: 838 HRVLLTGTPLQNNIGEMYNLLNFLQ--PSSFPSLSSFEERFHDLTSAEKVEELKKLVAPH 895
Query: 190 VLKRDKSEISFNIPKHTVEYVQLIL 264
+L+R K + NIP T V + L
Sbjct: 896 MLRRLKKDAMQNIPPKTERMVPVEL 920
>At2g28290.2 68415.m03434 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3529
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L +D +++ S L + E++ K L GQ DR FN
Sbjct: 1077 MLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFN 1136
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
+ + I LLSI+ GGVG+NL
Sbjct: 1137 KSG-SPFFIFLLSIRAGGVGVNL 1158
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 20/92 (21%)
Frame = +1
Query: 19 ATNRWCITGTPIHNKHWDMYSMINFLQCRPFN---DPRVW--KMLNKNNDST-------- 159
+++R +TGTP+ N ++++++NFL FN D W K N +S+
Sbjct: 905 SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSE 964
Query: 160 -------NRIKSIIKKIVLKRDKSEISFNIPK 234
NR+ +++ VL+R K ++ +P+
Sbjct: 965 EENLLIINRLHQVLRPFVLRRLKHKVENELPE 996
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 264 NEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLW-LILKLRQICCHPYLA 437
NE + + ++CE+ AY K + R +N S + +++LR IC HPYL+
Sbjct: 992 NELPEKIERLIRCEAS-AYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLS 1049
>At2g28290.1 68415.m03433 chromatin remodeling protein, putative (SYD)
similar to transcriptional activator HBRM [Homo sapiens]
GI:414117; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain; identical to cDNA putative chromatin
remodeling protein SYD (SPLAYED) GI:13603720
Length = 3574
Score = 40.3 bits (90), Expect = 0.001
Identities = 26/83 (31%), Positives = 39/83 (46%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L +D +++ S L + E++ K L GQ DR FN
Sbjct: 1077 MLDRMLPKLKATDHRVLFFSTMTRLLDVMEDYLTLKGYKYLRLDGQTSGGDRGALIDGFN 1136
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
+ + I LLSI+ GGVG+NL
Sbjct: 1137 KSG-SPFFIFLLSIRAGGVGVNL 1158
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/92 (25%), Positives = 45/92 (48%), Gaps = 20/92 (21%)
Frame = +1
Query: 19 ATNRWCITGTPIHNKHWDMYSMINFLQCRPFN---DPRVW--KMLNKNNDST-------- 159
+++R +TGTP+ N ++++++NFL FN D W K N +S+
Sbjct: 905 SSHRLLLTGTPLQNNLEELWALLNFLLPNIFNSSEDFSQWFNKPFQSNGESSAEEALLSE 964
Query: 160 -------NRIKSIIKKIVLKRDKSEISFNIPK 234
NR+ +++ VL+R K ++ +P+
Sbjct: 965 EENLLIINRLHQVLRPFVLRRLKHKVENELPE 996
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = +3
Query: 264 NEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLW-LILKLRQICCHPYLA 437
NE + + ++CE+ AY K + R +N S + +++LR IC HPYL+
Sbjct: 992 NELPEKIERLIRCEAS-AYQKLLMKRVEDNLGSIGNAKSRAVHNSVMELRNICNHPYLS 1049
>At3g06010.1 68416.m00686 homeotic gene regulator, putative similar
to SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1132
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/83 (30%), Positives = 40/83 (48%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L + +I+L SQ + + E + + L G K + R L FN
Sbjct: 747 LLDRLLPKLRKAGHRILLFSQMTRLIDVLEIYLTLNDYKYLRLDGTTKTDQRGLLLKQFN 806
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
D+ + + LLS + GG+GLNL
Sbjct: 807 EP-DSPYFMFLLSTRAGGLGLNL 828
Score = 31.9 bits (69), Expect = 0.50
Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 15/86 (17%)
Frame = +1
Query: 28 RWCITGTPIHNKHWDMYSMINFLQCRPFNDPR---VW---KMLNKNNDS---------TN 162
R +TGTPI N +++S++NFL FN + W ++ N S +
Sbjct: 586 RLLLTGTPIQNSLQELWSLLNFLLPHIFNSVQNFEEWFNAPFADRGNVSLTDEEELLIIH 645
Query: 163 RIKSIIKKIVLKRDKSEISFNIPKHT 240
R+ +I+ +L+R K E+ +P T
Sbjct: 646 RLHHVIRPFILRRKKDEVEKFLPGKT 671
>At1g03750.1 68414.m00355 helicase, putative similar to SP|Q03468
Excision repair protein ERCC-6 (Cockayne syndrome
protein CSB) {Homo sapiens}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF02810: SEC-C motif
Length = 862
Score = 39.5 bits (88), Expect = 0.002
Identities = 25/71 (35%), Positives = 33/71 (46%)
Frame = +2
Query: 548 DKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLS 727
DKI+L S V L I E F +K + G R FN A ++ L+S
Sbjct: 545 DKILLFSYSVRMLDILEKFLIRKGYSFARLDGSTPTNLRQSLVDDFN--ASPSKQVFLIS 602
Query: 728 IKCGGVGLNLI 760
K GG+GLNL+
Sbjct: 603 TKAGGLGLNLV 613
>At5g19310.1 68418.m02301 homeotic gene regulator, putative similar
to SP|P25439 Homeotic gene regulator (Brahma protein)
{Drosophila melanogaster}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 1064
Score = 39.1 bits (87), Expect = 0.003
Identities = 24/83 (28%), Positives = 40/83 (48%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L + +I+L SQ + + E + + L G K + R + FN
Sbjct: 699 LLDRLLPKLKKAGHRILLFSQMTRLIDLLEIYLSLNDYMYLRLDGSTKTDQRGILLKQFN 758
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
D+ + + LLS + GG+GLNL
Sbjct: 759 EP-DSPYFMFLLSTRAGGLGLNL 780
Score = 31.1 bits (67), Expect = 0.87
Identities = 25/86 (29%), Positives = 40/86 (46%), Gaps = 15/86 (17%)
Frame = +1
Query: 28 RWCITGTPIHNKHWDMYSMINFLQCRPFN---DPRVW----------KMLNKNND--STN 162
R +TGTPI N +++S++NFL FN + W L + N
Sbjct: 538 RLLLTGTPIQNSLQELWSLLNFLLPHIFNSIHNFEEWFNTPFAECGSASLTDEEELLIIN 597
Query: 163 RIKSIIKKIVLKRDKSEISFNIPKHT 240
R+ +I+ +L+R KSE+ +P T
Sbjct: 598 RLHHVIRPFLLRRKKSEVEKFLPGKT 623
>At3g57300.1 68416.m06378 transcriptional activator, putative similar
to transcriptional activator SRCAP [Homo sapiens]
GI:5106572; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1507
Score = 38.7 bits (86), Expect = 0.004
Identities = 24/87 (27%), Positives = 44/87 (50%)
Frame = +2
Query: 497 QVQTVLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAE 676
++QT LD++ L + +++L +Q + L I E++ + L G + DR
Sbjct: 1207 KLQT-LDILLKRLRAGNHRVLLFAQMTKMLNILEDYMNYRKYKYLRLDGSSTIMDRRDMV 1265
Query: 677 TTFNNAADTQHRILLLSIKCGGVGLNL 757
F + +D + LLS + GG+G+NL
Sbjct: 1266 RDFQHRSDIF--VFLLSTRAGGLGINL 1290
Score = 30.7 bits (66), Expect = 1.1
Identities = 23/98 (23%), Positives = 46/98 (46%), Gaps = 13/98 (13%)
Frame = +1
Query: 25 NRWCITGTPIHNKHWDMYSMINFLQCRPF-NDPRVWKMLNK------------NNDSTNR 165
NR +TGTPI N +++++++F+ F N + + +K N NR
Sbjct: 743 NRLLLTGTPIQNNMAELWALLHFIMPMLFDNHDQFNEWFSKGIENHAEHGGTLNEHQLNR 802
Query: 166 IKSIIKKIVLKRDKSEISFNIPKHTVEYVQLILMKKKK 279
+ +I+K +L+R K ++ + T V L +++
Sbjct: 803 LHAILKPFMLRRVKKDVVSELTTKTEVTVHCKLSSRQQ 840
>At2g18760.1 68415.m02184 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|Q03468 Excision
repair protein ERCC-6 (Cockayne syndrome protein CSB)
{Homo sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 1187
Score = 37.5 bits (83), Expect = 0.010
Identities = 22/71 (30%), Positives = 35/71 (49%)
Frame = +2
Query: 551 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 730
+++L SQ + L I E+F + G V+ R+ FNN+ D + +L+
Sbjct: 745 RVLLFSQTQQMLDILESFLVANEYSYRRMDGLTPVKQRMALIDEFNNSEDM--FVFVLTT 802
Query: 731 KCGGVGLNLIG 763
K GG+G NL G
Sbjct: 803 KVGGLGTNLTG 813
>At2g44980.2 68415.m05601 transcription regulatory protein SNF2,
putative similar to SNF2P [Oryza sativa (japonica
cultivar-group)] GI:23193483; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain; CG donor site annotated
in one isoform based on protein alignments.
Length = 870
Score = 37.1 bits (82), Expect = 0.013
Identities = 24/93 (25%), Positives = 45/93 (48%), Gaps = 9/93 (9%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
VLD + L+ S +++L SQ L I ++F + + + G ++ E+R A F+
Sbjct: 381 VLDQLLKRLHDSGHRVLLFSQMTSTLDILQDFMELRRYSYERLDGSVRAEERFAAIKNFS 440
Query: 689 NAAD---------TQHRILLLSIKCGGVGLNLI 760
+ + + ++S + GGVGLNL+
Sbjct: 441 AKTERGLDSEVDGSNAFVFMISTRAGGVGLNLV 473
>At1g02670.1 68414.m00217 DNA repair protein, putative similar to
SP|P79051 DNA repair protein rhp16 (RAD16 homolog)
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain
Length = 678
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +2
Query: 551 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 730
K I+ SQ+ +L + + ++ + G + + A F D R+LL+S+
Sbjct: 527 KAIVFSQFTSFLDLISYALGKSGVSCVQLVGSMSKAAKDAALKNFKEEPDC--RVLLMSL 584
Query: 731 KCGGVGLNLIGEPH 772
+ GGV LNL H
Sbjct: 585 QAGGVALNLTAASH 598
Score = 35.1 bits (77), Expect = 0.053
Identities = 13/31 (41%), Positives = 22/31 (70%)
Frame = +1
Query: 1 AACALTATNRWCITGTPIHNKHWDMYSMINF 93
A AL AT RW ++GTP+ N ++YS++++
Sbjct: 290 AVFALEATYRWALSGTPLQNDVDELYSLVSY 320
>At4g31900.1 68417.m04533 chromatin remodeling factor, putative
strong similarity to chromatin remodeling factor CHD3
(PICKLE) [Arabidopsis thaliana] GI:6478518; contains
Pfam profiles PF00271: Helicase conserved C-terminal
domain, PF00176: SNF2 family N-terminal domain
Length = 1202
Score = 35.5 bits (78), Expect = 0.040
Identities = 22/83 (26%), Positives = 42/83 (50%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L ++++ +Q+ L + E++F KN G++ +R + FN
Sbjct: 528 LLDKMMVKLKEQGHRVLIYTQFQHTLYLLEDYFTFKNWNYERIDGKISGPERQVRIDRFN 587
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
A ++ LLS + GG+G+NL
Sbjct: 588 -AENSNRFCFLLSTRAGGIGINL 609
Score = 32.7 bits (71), Expect = 0.28
Identities = 14/60 (23%), Positives = 35/60 (58%)
Frame = +1
Query: 37 ITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTNRIKSIIKKIVLKRDKSEI 216
+TGTP+ N +++++++FL F ++ +NK + +R+ ++ +L+R K ++
Sbjct: 383 LTGTPLQNNLNELFALMHFLDADKFGSLEKFQDINK-EEQISRLHQMLAPHLLRRLKKDV 441
Score = 31.1 bits (67), Expect = 0.87
Identities = 17/56 (30%), Positives = 28/56 (50%)
Frame = +3
Query: 267 EEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYL 434
++E L + + +E Y + T R ++ +VL +KLRQ+C HPYL
Sbjct: 449 KKELILRVDMSSQQKEVYKAVITNNYQVLTKKRDAKISNVL---MKLRQVCSHPYL 501
>At2g13370.1 68415.m01476 chromodomain-helicase-DNA-binding family
protein / CHD family protein similar to SP|O14647
Chromodomain-helicase-DNA-binding protein 2 (CHD-2) {Homo
sapiens}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain, PF00385: 'chromo' (CHRromatin
Organization MOdifier)
Length = 1722
Score = 35.1 bits (77), Expect = 0.053
Identities = 24/83 (28%), Positives = 36/83 (43%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L + ++++ SQ V L I + + G K E R A FN
Sbjct: 941 ILDKLLVRLRETKHRVLIFSQMVRMLDILAEYLSLRGFQFQRLDGSTKAELRQQAMDHFN 1000
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
A LLS + GG+G+NL
Sbjct: 1001 APASDDF-CFLLSTRAGGLGINL 1022
Score = 28.7 bits (61), Expect = 4.6
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = +1
Query: 1 AACALTATNRWCITGTPIHNKHWDMYSMINFLQCRPFNDPRVWKMLNKNNDSTN 162
A + N+ ITGTP+ N +++++++FL F + + KN S N
Sbjct: 773 ALLEFSTKNKLLITGTPLQNSVEELWALLHFLDPGKFKNKDEFVENYKNLSSFN 826
>At3g12810.1 68416.m01598 SNF2 domain-containing protein / helicase
domain-containing protein similar to transcriptional
activator SRCAP [Homo sapiens] GI:5106572; contains Pfam
profiles PF00271: Helicase conserved C-terminal domain,
PF00176: SNF2 family N-terminal domain
Length = 2055
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/71 (25%), Positives = 33/71 (46%)
Frame = +2
Query: 551 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 730
+ ++ +Q + L + E F + G E+R FN + + + +LS
Sbjct: 1093 RALIFTQMTKMLDVLEAFINLYGYTYMRLDGSTPPEERQTLMQRFNT--NPKIFLFILST 1150
Query: 731 KCGGVGLNLIG 763
+ GGVG+NL+G
Sbjct: 1151 RSGGVGINLVG 1161
Score = 31.5 bits (68), Expect = 0.66
Identities = 19/78 (24%), Positives = 40/78 (51%)
Frame = +3
Query: 264 NEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYLAMH 443
++ E ++ +L Y +A+ E++ TL+ ++ +I++LR++C HP L
Sbjct: 769 SKHEHVIFCRLSKRQRNLYEDFIASTETQATLTS-GSFFGMISIIMQLRKVCNHPDL-FE 826
Query: 444 GRNLLETNDCFKMDYMSS 497
GR ++ + D +D S
Sbjct: 827 GRPIVSSFDMAGIDVQLS 844
>At3g54280.1 68416.m05999 SNF2 domain-containing protein / helicase
domain-containing protein similar to SP|O14981
TBP-associated factor 172 (TAF-172) (TAF(II)170) {Homo
sapiens}; contains PFam profiles PF00271: Helicase
conserved C-terminal domain, PF00176: SNF2 family
N-terminal domain
Length = 2049
Score = 31.9 bits (69), Expect = 0.50
Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Frame = +2
Query: 524 DDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYT---GQLKVEDRILAETTFNNA 694
D L+ ++++ +Q L I E Q ++ ++ Y G + E R FN+
Sbjct: 1816 DGTLSVGQHRVLIFAQHKALLDIIEKDLFQAHMKSVTYMRLDGSVVPEKRFEIVKAFNS- 1874
Query: 695 ADTQHRILLLSIKCGGVGLNL 757
D +LLL+ GG+GLNL
Sbjct: 1875 -DPTIDVLLLTTHVGGLGLNL 1894
>At2g16370.1 68415.m01873 bifunctional dihydrofolate
reductase-thymidylate synthase 1 / DHFR-TS (THY-1)
identical to GP:289193:L08593 [SP|Q05762]
Length = 519
Score = 31.9 bits (69), Expect = 0.50
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 398 TEIEANLLPPVFGHAR*KSFGNKRLF*NGLYEQQ-VQTVLDLVDDILNTSDDKIILVSQW 574
TE E L PV+G + + FG K + Y Q ++D++D I N DD+ I++S W
Sbjct: 330 TEREEGDLGPVYGF-QWRHFGAKYTDMHADYTGQGFDQLVDVIDKIKNNPDDRRIIMSAW 388
>At4g34570.1 68417.m04912 bifunctional dihydrofolate
reductase-thymidylate synthase 2 / DHFR-TS (THY-2)
identical to SP|Q05763
Length = 565
Score = 31.1 bits (67), Expect = 0.87
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Frame = +2
Query: 398 TEIEANLLPPVFGHAR*KSFGNKRLF*NGLYEQQ-VQTVLDLVDDILNTSDDKIILVSQW 574
TE E L PV+G + + FG K + Y Q +LD+++ I N DD+ I++S W
Sbjct: 376 TEREEGDLGPVYGF-QWRHFGAKYTDMHADYTGQGFDQLLDVINKIKNNPDDRRIIMSAW 434
>At2g25170.1 68415.m03010 chromatin remodeling factor CHD3 (PICKLE)
identical to chromatin remodeling factor CHD3
[Arabidopsis thaliana] GI:6478518
Length = 1384
Score = 31.1 bits (67), Expect = 0.87
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +3
Query: 309 EEAYMKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYLAMHGRNLL-ETNDCFK 479
++ Y KA+ R + + + ++++LR++CCHPY+ ++ + N+ FK
Sbjct: 531 QKEYYKAIFTRNYQVLTKKGGAQISLNNIMMELRKVCCHPYMLEGVEPVIHDANEAFK 588
Score = 30.7 bits (66), Expect = 1.1
Identities = 20/93 (21%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Frame = +1
Query: 16 TATNRWCITGTPIHNKHWDMYSMINFLQCRPFND----PRVWKMLNKNNDSTNRIKSIIK 183
++ +R +TGTP+ N +++ +++FL F +K +N+ + +R+ ++
Sbjct: 442 SSNHRILLTGTPLQNNLDELFMLMHFLDAGKFGSLEEFQEEFKDINQ-EEQISRLHKMLA 500
Query: 184 KIVLKRDKSEISFNIP--KHTVEYVQLILMKKK 276
+L+R K ++ ++P K + V L ++K+
Sbjct: 501 PHLLRRVKKDVMKDMPPKKELILRVDLSSLQKE 533
Score = 30.3 bits (65), Expect = 1.5
Identities = 20/83 (24%), Positives = 40/83 (48%)
Frame = +2
Query: 509 VLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFN 688
+LD + L ++++ +Q+ L + E++ K G++ +R + FN
Sbjct: 599 LLDKMMVKLKEQGHRVLIYTQFQHMLDLLEDYCTHKKWQYERIDGKVGGAERQIRIDRFN 658
Query: 689 NAADTQHRILLLSIKCGGVGLNL 757
A ++ LLS + GG+G+NL
Sbjct: 659 -AKNSNKFCFLLSTRAGGLGINL 680
>At1g17120.1 68414.m02086 amino acid permease family protein low
similarity to SP|O43246 Cationic amino acid
transporter-4 (CAT-4) {Homo sapiens}; contains Pfam
profile PF00324: Amino acid permease
Length = 590
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +3
Query: 282 LYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWL 395
L D+L S +AY A RESEN + R +LWL
Sbjct: 56 LADRLLSRSSDAYELDAARRESENPMRRCLTWWDLLWL 93
>At3g54460.1 68416.m06025 SNF2 domain-containing protein / helicase
domain-containing protein / F-box family protein similar
to SP|P36607 DNA repair protein rad8
{Schizosaccharomyces pombe}; contains Pfam profiles
PF00271: Helicase conserved C-terminal domain, PF00176:
SNF2 family N-terminal domain, PF00646: F-box domain
Length = 1378
Score = 30.7 bits (66), Expect = 1.1
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
Frame = +1
Query: 4 ACALTATNRWCITGTPIHNKHWDMYS----MINFLQCRPFND-PRVWK 132
A +LTA NRW +TGTP N S ++ FL + + P+ W+
Sbjct: 852 AVSLTACNRWLLTGTPTPNTPNSQLSHIQPLLKFLHEEVYGENPKFWE 899
>At2g43650.1 68415.m05425 Sas10/U3 ribonucleoprotein (Utp) family
protein contains Pfam profile PF04000: Sas10/Utp3
family; contains Prosite PS00761: Signal peptidases I
signature 3; weak similarity to PEBP2 beta-binding
protein / charged amino acid rich leucine zipper
factor-1 (GI:12061569) [Mus musculus]
Length = 654
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/50 (30%), Positives = 28/50 (56%)
Frame = +1
Query: 118 PRVWKMLNKNNDSTNRIKSIIKKIVLKRDKSEISFNIPKHTVEYVQLILM 267
P + +L++ ND+ ++S I ++ K + EIS N +E QL+L+
Sbjct: 237 PEIVGLLSELNDAVEELESKINPVMNKLKEGEISLNGLARYLEVKQLLLL 286
>At1g36675.1 68414.m04563 glycine-rich protein
Length = 268
Score = 29.5 bits (63), Expect = 2.6
Identities = 15/56 (26%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = +2
Query: 539 TSDDKIILVSQWVEYLKIFENF-FKQKNIATLMYTGQLKVEDRILAETTFNNAADT 703
T+D ++L+S+W++Y +I K+ N+ + +G K A ++NA +T
Sbjct: 79 TTDQNLVLLSRWIKYEQIVSLVETKKDNVKRMQQSGWSKDGVLAKAHELYSNAGNT 134
>At1g72540.1 68414.m08388 protein kinase, putative similar to
auxin-regulated dual specificity cytosolic kinase
[Lycopersicon esculentum] gi|14484938|gb|AAK62821;
similar to serine/threonine protein kinase
gi|1066501|gb|AAA81538
Length = 450
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 7/69 (10%)
Frame = -3
Query: 433 KYGWQQICLNFSISHNT---CCICCN----RLSVFSLSRAATAFIYASSDSHFNLSYNVF 275
++ W+ ICL S +NT N +L + S + + +Y S S+ +S N F
Sbjct: 2 RFSWKNICLPISCINNTNQKKTTTTNPPKEKLLLLSRQTSVPSRVYMSDFSNSTISLNDF 61
Query: 274 SSSLKLTVH 248
S+S + +H
Sbjct: 62 SNSFFINIH 70
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 28.7 bits (61), Expect = 4.6
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
Frame = +3
Query: 243 RVCTVNFNEEEKTLYDKLKCESEEAYMKAVAARES--ENTLSRLQQMQHVLWLIL 401
+V T++ +E K+ E+E+ V S +N L LQQM + LWL L
Sbjct: 988 KVTTLDCSESPSEAGRKMGEETEDGDCNQVVFMNSLKKNCLQTLQQMNNTLWLFL 1042
>At1g79680.1 68414.m09293 wall-associated kinase, putative similar
to wall-associated kinase 2 GI:4826399 from [Arabidopsis
thaliana]
Length = 769
Score = 27.9 bits (59), Expect = 8.1
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 448 LPCMAKYGWQQICLNFSISHNTCC 377
L C A+YG + C N SI ++T C
Sbjct: 168 LYCNARYGDSEYCKNISIMNDTSC 191
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,595,551
Number of Sequences: 28952
Number of extensions: 330724
Number of successful extensions: 1079
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 982
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1073
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1765546400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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