Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120296.Seq
         (650 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC051337-1|AAH51337.1|  332|Homo sapiens interleukin 9 receptor ...    31   4.7  
BC009764-1|AAH09764.1|  212|Homo sapiens mitochondrial ribosomal...    30   6.2  
AF151876-1|AAD34113.1|  212|Homo sapiens CGI-118 protein protein.      30   6.2  

>BC051337-1|AAH51337.1|  332|Homo sapiens interleukin 9 receptor
           protein.
          Length = 332

 Score = 30.7 bits (66), Expect = 4.7
 Identities = 15/44 (34%), Positives = 19/44 (43%)
 Frame = -3

Query: 627 GTPECSWICAIRAPLVRTAAPCWGRSSTQSCCRLRIATCHVLYS 496
           G     W+   R      +A C G  S  SCC LR  +CH+  S
Sbjct: 111 GQGSSPWLLFTRLLAAHISASC-GAVSAPSCCHLRQCSCHLTIS 153


>BC009764-1|AAH09764.1|  212|Homo sapiens mitochondrial ribosomal
           protein L48 protein.
          Length = 212

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +1

Query: 310 KEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANF--DIKEFKSMFIVFKGI 483
           K+   KV   +I LGT Y+YGV   N   T+ ++T+    A +  ++    S+ +     
Sbjct: 69  KKKKGKVEVRAINLGTDYEYGVL--NIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYA 126

Query: 484 TPTKTVEDMACCDSKS 531
            PTKT+E +   D  S
Sbjct: 127 MPTKTIEVLQLQDQGS 142


>AF151876-1|AAD34113.1|  212|Homo sapiens CGI-118 protein protein.
          Length = 212

 Score = 30.3 bits (65), Expect = 6.2
 Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
 Frame = +1

Query: 310 KEGSNKVGTNSIFLGTVYDYGVKSPNAASTSSNVTMTRGTANF--DIKEFKSMFIVFKGI 483
           K+   KV   +I LGT Y+YGV   N   T+ ++T+    A +  ++    S+ +     
Sbjct: 69  KKKKGKVEVRAINLGTDYEYGVL--NIHLTAYDMTLAESYAQYVHNLCNSLSIKVEESYA 126

Query: 484 TPTKTVEDMACCDSKS 531
            PTKT+E +   D  S
Sbjct: 127 MPTKTIEVLQLQDQGS 142


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,672,172
Number of Sequences: 237096
Number of extensions: 1944019
Number of successful extensions: 11927
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11823
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11927
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 7253890590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)