Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120295.Seq
         (716 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.    23   2.5  
AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless protein.    22   4.3  
EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450 ...    21   7.6  

>AJ518941-1|CAD57735.1|  456|Tribolium castaneum homothorax protein.
          Length = 456

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +1

Query: 481 PYRATSSKPTQPHHVAGRLHARGANERDRLH 573
           PY A    PT  H + G +   G  ++D ++
Sbjct: 51  PYHANHVNPTANHVMGGAVPDVGKRDKDAIY 81


>AY563109-1|AAS99587.1|   46|Tribolium castaneum aristaless protein.
          Length = 46

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 479 SHTAQQVQSQHNRITLLEDYTREELMNVIGSTMTERQI 592
           S+  ++++   +R    + +TREEL   IG T    Q+
Sbjct: 6   SYQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQV 43


>EU008544-1|ABS31131.1|  493|Tribolium castaneum cytochrome P450
           protein.
          Length = 493

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = +2

Query: 515 RITLLEDYTREELMNVIGSTMTERQ 589
           R+T ++    + L+NV  +T+ ER+
Sbjct: 230 RLTFVDKTASDYLINVFKTTLQERE 254


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 163,498
Number of Sequences: 336
Number of extensions: 3189
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19051215
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)