Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120295.Seq
         (716 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa...    29   0.88 
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    28   1.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    28   1.5  
SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces ...    27   2.0  
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch...    26   4.7  
SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces pom...    26   4.7  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   6.2  
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual             26   6.2  
SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   6.2  
SPBC21.01 |mis17|SPBC776.19|kinetochore protein Mis17|Schizosacc...    25   8.2  
SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces...    25   8.2  
SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    25   8.2  

>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1628

 Score = 28.7 bits (61), Expect = 0.88
 Identities = 18/81 (22%), Positives = 35/81 (43%)
 Frame = -3

Query: 705 KNSIYYALRKHFAGHPMLKRLTTYKNF*LPLRKLFMRAICRSVIVEPITFIXXXXXXXXS 526
           ++ ++Y    +    P+L+ LT + N  +P  +L   A+C   ++              S
Sbjct: 512 ESEVFYYFENYDEDIPILRNLTEFYNIAIPWLRLSGLALCHDPVIVTKLCRIGQKCVDNS 571

Query: 525 NVMRLCWL*TCCAVWLPLLCL 463
           +  R  WL    ++ LPL+ L
Sbjct: 572 SESRTLWLDIIRSLLLPLITL 592


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +1

Query: 469 K*RKPYRATSSKPTQPHHVAGRLHARGANERDRLHYDRTT 588
           K R+P    SS P+ P H++ + H+   +  D  H D+ T
Sbjct: 113 KRRQPSVFNSSVPSLPQHLSTKSHSVSTHGVDAFHKDQAT 152


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +2

Query: 467 QSKGSHTAQQVQSQHNRITLLEDYTREELMNVIGSTMTERQIARMNS 607
           Q++ SH  +QVQS H  ++ +E+  ++ +     S + E  + +  S
Sbjct: 153 QNENSHLGEQVQSAHQALSDIEERKKQHMFASSSSRVKEEILVQEKS 199


>SPCC1223.06 |tea1|alp8|cell end marker Tea1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1147

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 82  DVIAKIDDLTQKLTVANAD 138
           D  +KID LT+KL VANA+
Sbjct: 618 DSASKIDSLTEKLKVANAE 636


>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2176

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -2

Query: 325  RLWHSCGLLGLAITSCAMSAMRL--AAAPFRGARFRNLAEPFQRRVEPQSFRWQ 170
            R W S   L L   +C M   RL    +P R  +F N      RRVE + F WQ
Sbjct: 1140 RGWSSVATLSL--DTCKMIEKRLWPTMSPLR--QFPNCPSEVIRRVEKKEFPWQ 1189


>SPBC725.01 |||aspartate aminotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 437

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
 Frame = -1

Query: 164 MSDRLASAKSALATVNFCVKSSILAI-----TSFVSISTAGAYLPVHST*GMT 21
           + DRL SA+S   T   C+ ++ LA      T +VS  T G +  V S  G+T
Sbjct: 128 IKDRLVSAQSISGTGALCIAANFLASFYPSKTIYVSDPTWGNHKNVFSRAGLT 180


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +3

Query: 210 GSARLRKRAPRNGAAANRMADIAQDVIAKPSNPQLCHSLAVCDVGNN 350
           G +++ KRA  +      +AD+++ ++   S     HS A+ ++G N
Sbjct: 447 GGSQIEKRANESNNLQREIADLSEQIVELESKRNDLHS-ALLEMGGN 492


>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 264

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 364 CARKNDRWAAA*NDW 408
           C RK++RW AA N W
Sbjct: 140 CRRKDNRWFAAINKW 154


>SPCC1682.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 238

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 18/62 (29%), Positives = 27/62 (43%)
 Frame = +1

Query: 52  YAPAVEMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCEN 231
           YAP+V      +   I  L + +  A   LA    SL+LF   + V  +D ET   +  +
Sbjct: 146 YAPSVAKANEGLAKAIAGLAKYVAKAIQGLAHIILSLLLFILGLEVIEQDEETGDVEMSS 205

Query: 232 AR 237
            R
Sbjct: 206 MR 207


>SPBC21.01 |mis17|SPBC776.19|kinetochore protein
           Mis17|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 441

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
 Frame = +1

Query: 136 DLAEANRSLILF----ANEMIVARRDAETARQDCENARRETAQL 255
           DL +ANR L       ANE +  +RD    R+D  + +R+  QL
Sbjct: 318 DLLDANRILSTACKKAANEKLAVQRDLSKLREDRLSVQRKKIQL 361


>SPBC646.03 |||glutamyl-tRNA amidotransferase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 471

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 4/26 (15%)
 Frame = -1

Query: 533 LPAT*CGCVGFE----LVARYGFLYF 468
           LPA   GCVGF+     ++RYG L F
Sbjct: 168 LPAAYVGCVGFKPSFGRISRYGMLAF 193


>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 166 LFANEMIVARRDAETARQDCE 228
           +FANE+++ + DA++ +QD E
Sbjct: 556 IFANEILIEQADAQSFKQDEE 576


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,839,308
Number of Sequences: 5004
Number of extensions: 53578
Number of successful extensions: 137
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 335201398
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)