Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120295.Seq
(716 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0066 + 25307863-25307871,25308431-25308570,25308712-253087... 34 0.098
11_01_0464 + 3597568-3600244,3600345-3600742 33 0.30
03_05_1042 - 29893649-29893721,29893960-29894033,29894111-298941... 30 2.1
12_01_0318 - 2425178-2425267,2425830-2426008,2426594-2426654,242... 29 2.8
10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380 29 2.8
12_02_0942 - 24653834-24654046,24654346-24654482,24654626-246549... 29 3.7
11_01_0467 + 3621266-3621401,3621531-3622699,3622815-3623128,362... 29 3.7
09_04_0247 + 16030543-16031324,16032812-16033088,16033374-160335... 29 3.7
01_06_0188 - 27310814-27311138,27311197-27311547,27311682-273116... 29 4.9
11_06_0656 + 25926192-25926289,25927530-25927659,25928248-259282... 28 8.5
11_01_0605 + 4821363-4823246 28 8.5
10_08_0704 - 20018477-20018542,20018693-20018704,20018731-200189... 28 8.5
>05_06_0066 +
25307863-25307871,25308431-25308570,25308712-25308754,
25308994-25310022
Length = 406
Score = 34.3 bits (75), Expect = 0.098
Identities = 23/55 (41%), Positives = 33/55 (60%), Gaps = 3/55 (5%)
Frame = +1
Query: 94 KIDDLTQKLTVANADLA--EA-NRSLILFANEMIVARRDAETARQDCENARRETA 249
+ID+L KLT +AD+A EA N L+ A E A ++ T +D E+A RE+A
Sbjct: 244 EIDELRAKLTSKDADIAAVEADNAELMKMAEEASHAVKETATKARDTEHALRESA 298
>11_01_0464 + 3597568-3600244,3600345-3600742
Length = 1024
Score = 32.7 bits (71), Expect = 0.30
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 297 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSM-NVLNKV 473
PS H+L V ++ N F+ + P +SL++L D F+ +P+S+ N+ N V
Sbjct: 384 PSGLTNLHNLVVIELSGNRFSGVLPDWLGALKSLQKLTVGDNNFTG-LIPSSLFNLTNLV 442
Query: 474 KEAIPRNKFKANTTAS 521
+ NKF AS
Sbjct: 443 HLFLYSNKFSGQLPAS 458
>03_05_1042 -
29893649-29893721,29893960-29894033,29894111-29894179,
29894333-29894438,29894548-29894664,29895412-29895527,
29895612-29895698,29897281-29897309,29897914-29898169
Length = 308
Score = 29.9 bits (64), Expect = 2.1
Identities = 29/105 (27%), Positives = 42/105 (40%)
Frame = +3
Query: 3 RMAFGGGHSSSAMHGQVRAGR*NGYK*CYCQN*RFDAKIDGGQRRFGGSQPIAHFVCQRN 182
R FG G SSA G G + + +CQN +++ RR G + P +C N
Sbjct: 174 RADFGDGSCSSAPCGSTANGEDDHIRETHCQNCGISSRLTPAMRR-GPAGP--RSLC--N 228
Query: 183 DCGSTRR*NGSARLRKRAPRNGAAANRMADIAQDVIAKPSNPQLC 317
CG G+ R AP+ AD+++ S LC
Sbjct: 229 ACGLMWANKGTLRSPLNAPK--MTVQHPADLSKTGDTDDSKANLC 271
>12_01_0318 -
2425178-2425267,2425830-2426008,2426594-2426654,
2426851-2427160,2428514-2428777,2432595-2433865
Length = 724
Score = 29.5 bits (63), Expect = 2.8
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 165 FVCQRNDCGSTRR*NGSARLRKRAP 239
FVC R C RR G ARLR+ +P
Sbjct: 430 FVCSRLACALLRRRRGRARLRRASP 454
>10_06_0107 + 10840633-10841200,10841364-10841488,10856838-10857380
Length = 411
Score = 29.5 bits (63), Expect = 2.8
Identities = 20/62 (32%), Positives = 31/62 (50%)
Frame = +1
Query: 97 IDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLPTAWRTL 276
+DD ++ +A AD A+A IL A ++ R A+ ARQ R PT+ R+
Sbjct: 79 VDDFLDEIALAAADNADA----ILIAGKVSKFRERAQEARQRRRRTRYGLCHHPTSRRSS 134
Query: 277 RK 282
R+
Sbjct: 135 RR 136
>12_02_0942 -
24653834-24654046,24654346-24654482,24654626-24654959,
24655067-24655153,24655254-24655580
Length = 365
Score = 29.1 bits (62), Expect = 3.7
Identities = 14/63 (22%), Positives = 29/63 (46%)
Frame = +3
Query: 249 AAANRMADIAQDVIAKPSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIF 428
A ++M++++ + N C+S+ V D+ NN + RP + S + + D +
Sbjct: 279 ALESKMSNLSPSCLIDKENVHACYSMMVGDMNNNRRSSKRPLQCSDSNEITTTSTYDSVL 338
Query: 429 SSD 437
D
Sbjct: 339 VDD 341
>11_01_0467 +
3621266-3621401,3621531-3622699,3622815-3623128,
3623276-3623937,3624040-3624401
Length = 880
Score = 29.1 bits (62), Expect = 3.7
Identities = 19/72 (26%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Frame = +3
Query: 297 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKVK 476
PS H+L + + +N+F + P+ ++L++L D F ++P S++ L+++
Sbjct: 341 PSGIAKFHNLIILGLDHNQFTGVVPEWLGTLQALQKLSLLDNNFIG-FLPTSLSNLSQLS 399
Query: 477 EA-IPRNKFKAN 509
E + NKF N
Sbjct: 400 ELFLGSNKFDGN 411
>09_04_0247 +
16030543-16031324,16032812-16033088,16033374-16033559,
16033714-16033866,16034277-16034702,16035922-16037668,
16037687-16038183,16038519-16038709,16038786-16038941,
16040077-16040311,16040416-16040723,16041279-16041439,
16041852-16041895,16041975-16042067
Length = 1751
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/44 (34%), Positives = 26/44 (59%)
Frame = -1
Query: 179 SLANKMSDRLASAKSALATVNFCVKSSILAITSFVSISTAGAYL 48
+L +SD LAS S+LA V +++ A+ S S S++ +Y+
Sbjct: 44 TLRASLSDLLASIPSSLALVGPAAAAAVAAVASSFSSSSSSSYV 87
>01_06_0188 -
27310814-27311138,27311197-27311547,27311682-27311693,
27313598-27313662,27314945-27314968
Length = 258
Score = 28.7 bits (61), Expect = 4.9
Identities = 21/53 (39%), Positives = 27/53 (50%)
Frame = +3
Query: 123 GGQRRFGGSQPIAHFVCQRNDCGSTRR*NGSARLRKRAPRNGAAANRMADIAQ 281
GG RR G S+ H +R+D G RR GS R R+P ++ R A I Q
Sbjct: 202 GGGRRGGSSR---H---ERHDDGGRRRHGGSPPRRARSPVRESSEERRAKIEQ 248
>11_06_0656 +
25926192-25926289,25927530-25927659,25928248-25928294,
25929274-25929388,25929504-25929753,25930079-25930239,
25930372-25930567,25930672-25930836,25930918-25931070,
25931160-25931248,25931385-25931423,25931460-25931681,
25933503-25934165
Length = 775
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = +3
Query: 132 RRFGGSQPIAHFVCQRNDCGSTRR*NGSARLRKRAPRNGAAANR 263
RR G++P A C+R G + RAPR+G AA R
Sbjct: 664 RRGAGARPAARGRCRRGRRGRAAG-GATVSAEARAPRDGGAATR 706
>11_01_0605 + 4821363-4823246
Length = 627
Score = 27.9 bits (59), Expect = 8.5
Identities = 19/59 (32%), Positives = 29/59 (49%)
Frame = +3
Query: 297 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLGRSLKRLGSNDVIFSSDYVPNSMNVLNKV 473
PS+ L SL D+GNNE + P L+RL + + S VP+S+ L ++
Sbjct: 480 PSSISLLQSLITIDLGNNELIGIIPTNIGTFLKLERLDLSK-NYLSGQVPSSVANLERL 537
>10_08_0704 -
20018477-20018542,20018693-20018704,20018731-20018927,
20018928-20018999,20019159-20021289
Length = 825
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 297 PSNPQLCHSLAVCDVGNNEFAFLRPQKRSLG-RSLKRLGSNDVIFSSDYVPNSMNVLNKV 473
PS+ ++C +L D+GNN F P G SLK L F+ + +P+ ++ L+++
Sbjct: 577 PSSLEMCKALITLDIGNNRFFGGIPPWIGKGLLSLKFLSLKSNNFTGE-IPSELSNLSQL 635
Query: 474 K 476
+
Sbjct: 636 Q 636
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,628,897
Number of Sequences: 37544
Number of extensions: 406636
Number of successful extensions: 1278
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1278
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -