Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120295.Seq
         (716 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_24697| Best HMM Match : Filament (HMM E-Value=0.11)                 29   2.8  
SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.8  
SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.6  
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   28   6.6  
SB_26006| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.7  
SB_16472| Best HMM Match : DUF922 (HMM E-Value=2.5)                    28   8.7  
SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)                  28   8.7  
SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)                 28   8.7  

>SB_24697| Best HMM Match : Filament (HMM E-Value=0.11)
          Length = 266

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 17/73 (23%), Positives = 33/73 (45%)
 Frame = +1

Query: 67  EMDTNDVIAKIDDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRET 246
           E   ND+ A++  L QKL     +L  + +   L+ +E     + +   R D  + R++ 
Sbjct: 180 EQARNDLQAQVHSLQQKLNSLEDELDRSQKERALYESEANDLNQTSMKHRDDATSTRKQV 239

Query: 247 AQLPTAWRTLRKT 285
            +L     +LR +
Sbjct: 240 MELQGVIDSLRSS 252


>SB_6484| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 741

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
 Frame = +1

Query: 112 QKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARR---ETAQLPTAWRT 273
           +K+  A A L EA + L     + I  R+D ++  +DCEN  R   +T Q   A RT
Sbjct: 5   EKVDPAEA-LLEAQQELATLQRQYICLRKDKKSYTEDCENVIRRQEDTIQALQAERT 60


>SB_36409| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1281

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/66 (24%), Positives = 31/66 (46%), Gaps = 3/66 (4%)
 Frame = +1

Query: 67  EMDTNDVIAKIDDLTQKL---TVANADLAEANRSLILFANEMIVARRDAETARQDCENAR 237
           + + +D+  K+DDL QKL        DL   +R + +   E+ + R   E  R + ++  
Sbjct: 93  DAEVSDLKIKLDDLQQKLKQEKQIQEDLQGHSRQVKMLTKELEILRAHEEKTRSELQSTE 152

Query: 238 RETAQL 255
              ++L
Sbjct: 153 GNASEL 158


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = -2

Query: 406 NRFRLRPSDRFCGRRNANSLLPTSHTARLWHSCGLLGLAITSCAMSAMRL 257
           N FRL PSDR   R    S  P S  A +     + G AI  C    +++
Sbjct: 136 NCFRLDPSDRKYDRIYCGSACPPSKVAFILSMTKIGGFAIIPCRNKLLKI 185


>SB_26006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 21/62 (33%), Positives = 29/62 (46%)
 Frame = +1

Query: 100 DDLTQKLTVANADLAEANRSLILFANEMIVARRDAETARQDCENARRETAQLPTAWRTLR 279
           DD TQK+ V   DL EA   L    ++ +   +D + +     NARR    L T  R L 
Sbjct: 152 DDFTQKVLVLETDLTEALDEL----SDALEREKDYDIS---INNARRREKSLMTKVRRLE 204

Query: 280 KT 285
           +T
Sbjct: 205 ET 206


>SB_16472| Best HMM Match : DUF922 (HMM E-Value=2.5)
          Length = 399

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 488 AQQVQSQHNRITLLEDYTREELMNVIGSTMTERQIARMNSLRNG 619
           A+ ++S    ITLL + TR  L  ++ ST  ER+  + N    G
Sbjct: 184 ARHIESVWETITLLGNKTRSSLDQILQSTDKEREERKANHSSTG 227


>SB_11780| Best HMM Match : UPF0058 (HMM E-Value=0.32)
          Length = 788

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 12/36 (33%), Positives = 24/36 (66%)
 Frame = -1

Query: 182 ISLANKMSDRLASAKSALATVNFCVKSSILAITSFV 75
           ++ A ++S+ LAS KS+L  + F ++ + L + SF+
Sbjct: 368 VASAGRLSEDLASLKSSLGLILFNLEDATLDLESFI 403


>SB_11213| Best HMM Match : RVT_1 (HMM E-Value=6.4e-38)
          Length = 510

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
 Frame = +1

Query: 136 DLAEANRSLI-LFANEMIVARRDAETARQDCENARRETAQLPTAW 267
           D+ E+ RS I LFA++ I  R     +R+DCE  RR+ ++L  +W
Sbjct: 261 DIQESVRSEIRLFADDCICYR--TIRSREDCEELRRDISRL-ASW 302


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,010,574
Number of Sequences: 59808
Number of extensions: 432935
Number of successful extensions: 1212
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1211
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1901817086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)