Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120295.Seq
         (716 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY325814-1|AAP88969.1|  509|Drosophila melanogaster traffic jam ...    33   0.51 
AE014134-3104|AAF53804.2|  509|Drosophila melanogaster CG10034-P...    33   0.51 
AJ278684-2|CAB99192.1|  989|Drosophila melanogaster endonuclease...    32   0.90 
AE013599-3144|AAM70856.1|  980|Drosophila melanogaster CG30389-P...    29   6.3  
AE013599-3143|AAF46685.2|  980|Drosophila melanogaster CG30389-P...    29   6.3  
AY061282-1|AAL28830.1|  378|Drosophila melanogaster LD20087p pro...    29   8.4  
AE014134-264|AAF51367.2|  378|Drosophila melanogaster CG7420-PA ...    29   8.4  

>AY325814-1|AAP88969.1|  509|Drosophila melanogaster traffic jam
           protein.
          Length = 509

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -1

Query: 257 GSCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVKSSIL 93
           GSC ++R A  Q CR +SAS   +    +N MS R  S   + AT+  C+   +L
Sbjct: 351 GSCVITRAAL-QPCRPLSASSTRS----SNNMSPRTCSGAYSNATLEDCLNDDML 400


>AE014134-3104|AAF53804.2|  509|Drosophila melanogaster CG10034-PA
           protein.
          Length = 509

 Score = 32.7 bits (71), Expect = 0.51
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -1

Query: 257 GSCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVKSSIL 93
           GSC ++R A  Q CR +SAS   +    +N MS R  S   + AT+  C+   +L
Sbjct: 351 GSCVITRAAL-QPCRPLSASSTRS----SNNMSPRTCSGAYSNATLEDCLNDDML 400


>AJ278684-2|CAB99192.1|  989|Drosophila melanogaster
           endonuclease/reverse transcriptase protein.
          Length = 989

 Score = 31.9 bits (69), Expect = 0.90
 Identities = 16/64 (25%), Positives = 30/64 (46%)
 Frame = -1

Query: 260 VGSCAVSRRAFSQSCRAVSASRRATIISLANKMSDRLASAKSALATVNFCVKSSILAITS 81
           + SC  +++ +  S RAVS +    +I     +SD  A A S +  ++  +K   LA   
Sbjct: 780 IWSCVSTKKTYLDSARAVSRTMALRLIRGFRTISDDAAHALSGITPIDLDIKGKYLASEG 839

Query: 80  FVSI 69
           +  +
Sbjct: 840 YTQL 843


>AE013599-3144|AAM70856.1|  980|Drosophila melanogaster CG30389-PC,
           isoform C protein.
          Length = 980

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +2

Query: 125 WPTQIWRKPTDRSFCLPTK*LWLDATLKRLG-KIAKTRAAKRRS-CQPHGGHC 277
           W   +W   TD+  CLPT  LW+      +G +   +R       C+P   HC
Sbjct: 110 WVQYVWH--TDKGICLPTIILWMLFVYLEVGIRWKDSRHMPHLDLCRPFAAHC 160


>AE013599-3143|AAF46685.2|  980|Drosophila melanogaster CG30389-PA,
           isoform A protein.
          Length = 980

 Score = 29.1 bits (62), Expect = 6.3
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +2

Query: 125 WPTQIWRKPTDRSFCLPTK*LWLDATLKRLG-KIAKTRAAKRRS-CQPHGGHC 277
           W   +W   TD+  CLPT  LW+      +G +   +R       C+P   HC
Sbjct: 110 WVQYVWH--TDKGICLPTIILWMLFVYLEVGIRWKDSRHMPHLDLCRPFAAHC 160


>AY061282-1|AAL28830.1|  378|Drosophila melanogaster LD20087p
           protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 526 AGRLHARGANERDRLHYDRTTNCAHEQF 609
           +GR+HA G N R +L  D T  C H +F
Sbjct: 55  SGRIHACGWNNRGQLGLDSTEEC-HSEF 81


>AE014134-264|AAF51367.2|  378|Drosophila melanogaster CG7420-PA
           protein.
          Length = 378

 Score = 28.7 bits (61), Expect = 8.4
 Identities = 13/28 (46%), Positives = 17/28 (60%)
 Frame = +1

Query: 526 AGRLHARGANERDRLHYDRTTNCAHEQF 609
           +GR+HA G N R +L  D T  C H +F
Sbjct: 55  SGRIHACGWNNRGQLGLDSTEEC-HSEF 81


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 32,288,753
Number of Sequences: 53049
Number of extensions: 671891
Number of successful extensions: 2220
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2220
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3190721655
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)