Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120294.Seq
(885 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 104 2e-23
SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit... 30 0.50
SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces p... 29 0.88
SPCC16A11.01 ||SPCC63.15|conserved fungal protein|Schizosaccharo... 28 2.0
SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4 |Schi... 28 2.0
SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr 1... 28 2.0
SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr... 27 3.6
SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 3.6
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 6.2
SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyce... 26 8.2
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce... 26 8.2
SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces pomb... 26 8.2
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 104 bits (249), Expect = 2e-23
Identities = 48/85 (56%), Positives = 61/85 (71%)
Frame = +2
Query: 2 QGITCLIQISTDEGGDFIIDALAVREHIHKLNVVFTDPKKLKVFHGADSDVLWLQRDFGV 181
+G CL+QIS E D+I+D L +RE + LNVVFT+P +KVFHGA D++WLQRDFG+
Sbjct: 253 RGFVCLMQISNREK-DWIVDTLELREELEALNVVFTNPNIIKVFHGATMDIIWLQRDFGL 311
Query: 182 YLVGLFDTYHAAKSLGLPALSLKFL 256
Y+V LFDTY+A K LG L FL
Sbjct: 312 YVVNLFDTYYATKVLGFEGHGLAFL 336
Score = 93.1 bits (221), Expect = 5e-20
Identities = 40/79 (50%), Positives = 55/79 (69%), Gaps = 1/79 (1%)
Frame = +1
Query: 256 LMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEKNA-GQTNM 432
L KYC D DK Y++ADWRIRPLP ++KYA+ DTHYLLY+W ++N++I K+A + N+
Sbjct: 337 LQKYCDYDADKRYQMADWRIRPLPREMLKYAQSDTHYLLYIWDHLRNELISKSAERKENL 396
Query: 433 LLSVFEDSRQTCASTYNKE 489
+ SVF S+Q Y E
Sbjct: 397 MQSVFNSSKQISLRKYELE 415
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/76 (30%), Positives = 41/76 (53%)
Frame = +3
Query: 528 SKKNFDNQQMAALKMLYKWRDSQARQLDESTTYLLPNHMLLSLSENLPRELQGVNACCDP 707
S K + + + L+ WRDS AR+ DES Y+LPN +L++++ + P E V +
Sbjct: 437 SSKIIGREALMIYRALHDWRDSVARKEDESVRYVLPNRLLIAIAASKPVEAADVFSISKQ 496
Query: 708 MPPFVKQNVITIHRMI 755
+ P + V I +++
Sbjct: 497 LTPIARMYVEDIVKVV 512
>SPBC337.05c |cct8||chaperonin-containing T-complex theta subunit
Cct8 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 546
Score = 29.9 bits (64), Expect = 0.50
Identities = 14/53 (26%), Positives = 28/53 (52%)
Frame = -1
Query: 399 LILHNAPNVQKIVRIHASVLDQHVRKRTNAPVRQTIRFIGVNAAILHQRNLSE 241
++LHNA + + ++++ H+++ +A VR + VN +LH N E
Sbjct: 257 VLLHNAQEMLDFSKGEENLIESHIKEIYDAGVRVVVTSGNVNDLVLHYLNRFE 309
>SPCC126.04c |||SAGA complex subunit Sgf73 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 344
Score = 29.1 bits (62), Expect = 0.88
Identities = 24/109 (22%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Frame = -1
Query: 354 HASVLDQHVRKRTNAPVRQTIRFIGVNAAILHQRNL---SESAGRPSDLAAWYVSKRPTK 184
++ VL++ V NAP++ ++ +A H++N ++ P +K+PTK
Sbjct: 118 NSQVLNKDVNNGNNAPIKNGVKSTAKGSAGNHEKNSVNGQKNPEMPPKRRKTEENKKPTK 177
Query: 183 YT-PKSR*SQRTS--LSAPWNTFSFLGSVKTTFSLCMCSLTARASMIKS 46
PK S++ + + P + G + +C SLT + + S
Sbjct: 178 SALPKKEASKKKNPKVKGPVDVEKQCGVLLPNGQMCARSLTCKTHSMSS 226
>SPCC16A11.01 ||SPCC63.15|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 328
Score = 27.9 bits (59), Expect = 2.0
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = -2
Query: 884 IFRFVIEVVHFIMYLLYPGVHHVPYAGR 801
IF+FVI VV I + + G+HH Y GR
Sbjct: 180 IFKFVIIVVGIICAIAFGGLHH-NYRGR 206
>SPBC1711.10c |npl4||Cdc48-Ufd1-Npl4 complex component Npl4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/68 (26%), Positives = 31/68 (45%)
Frame = -2
Query: 383 RQTYKR*CVSMRAYLINTSGSGRMRQSARRYVLSVSTPQYFIKEI*AKARADLVTWLRGM 204
RQ K +S AYL + + S++ ++ + P + +KE K + W G+
Sbjct: 164 RQENKIKHLSFHAYLRKINSNVNKYASSQSFIPPLEEPSFTVKE---KCPSGHPPWPAGI 220
Query: 203 CRKDPPNT 180
C K P+T
Sbjct: 221 CTKCQPST 228
>SPAC521.04c |||calcium permease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 881
Score = 27.9 bits (59), Expect = 2.0
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Frame = -2
Query: 431 IFVCPAFFSII*FFITRQ--TYKR*CVSMRAYLINTSGSGRMRQSARRYVLSVSTPQY 264
IF+C FF+++ FF Y + C + YL+ G +R +R LSV +P +
Sbjct: 213 IFICYIFFTVLSFFNVPDAIVYSKLCRGLMFYLLYPFGQ-HVRHKVKR--LSVRSPAH 267
>SPBC1604.08c |imp1||importin alpha|Schizosaccharomyces pombe|chr
2|||Manual
Length = 539
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Frame = +3
Query: 372 VRLARYEESNNREE-CWTNEYATVGLRGQPSDLRLYI 479
V L Y + ++E CW AT G GQP +R +
Sbjct: 380 VHLLSYADYKTKKEACWAISNATSGGLGQPDQIRYLV 416
>SPBC28E12.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/63 (25%), Positives = 31/63 (49%)
Frame = +1
Query: 367 LLYVWRVMKNQIIEKNAGQTNMLLSVFEDSRQTCASTYNKEVIHDESPYHYTYVRRRISI 546
LL+V ++K + K+ + L + + + TC S Y K D+ +H R+R++
Sbjct: 284 LLHVKELLKFAL--KHIDSNDSLFTFLKQTCYTCDSPYAKVFQPDKQSFHSIISRKRLAH 341
Query: 547 ISK 555
+ K
Sbjct: 342 LEK 344
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 26.2 bits (55), Expect = 6.2
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +1
Query: 391 KNQIIEKNAGQTNMLLSVFEDSRQTC-ASTYNKEVIHDESPYHYTYVRRRISII 549
K+ II +N ++ SV+ED + S N+ + S HYT +RIS+I
Sbjct: 287 KHVIIYENKEGSSSSESVYEDVFEDFDPSGSNQASLRSTSTIHYTPSSKRISVI 340
>SPAC6G9.09c |rpl24||60S ribosomal protein L24|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 149
Score = 25.8 bits (54), Expect = 8.2
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
Frame = -1
Query: 360 RIHAS-VLDQHVRKRTNAPVRQTIRFIGVNAAILHQRNLSESAGRPSDLAAWYVSKRPTK 184
R+H + ++H +KRT V+ +G N ++ ++ R + AA ++ K
Sbjct: 57 RMHKKGISEEHAKKRTRRTVKHQRGIVGANLDVIKEKRNQRPEVRAAARAAALKQRKDKK 116
Query: 183 YTPKS 169
+S
Sbjct: 117 AASES 121
>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1261
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/61 (24%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = -1
Query: 432 HIRLSSILLDYLILHNAPNVQKIVRIHASVLDQHVRKRTNAPVRQTIRF-IGVNAAILHQ 256
+I L + D L ++ N+QKI++++ +L+ + N +T+ F + A +HQ
Sbjct: 219 NIVLQCMSTDDYFLSSSKNIQKIIKVYVDMLNSFI--SPNVTTFETVIFALCRRAKFVHQ 276
Query: 255 R 253
+
Sbjct: 277 K 277
>SPBC106.19 ||SPBC582.01|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 515
Score = 25.8 bits (54), Expect = 8.2
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = -3
Query: 763 NDKIIRWMVITFCLTN 716
ND +R MVI FCL N
Sbjct: 286 NDAYLRMMVINFCLAN 301
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,693,610
Number of Sequences: 5004
Number of extensions: 78108
Number of successful extensions: 200
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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