Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120294.Seq
(885 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0136 - 15122420-15122469,15123845-15124334,15124822-151249... 91 1e-18
03_01_0397 + 3086142-3086489,3087097-3087252,3088043-3088201,308... 79 6e-15
07_03_0572 - 19604643-19604745,19604947-19605629,19605786-196062... 62 8e-10
07_03_0232 + 15539586-15539696,15541524-15541727,15542612-155426... 38 0.008
05_03_0667 + 16781857-16782001,16784506-16784544,16785229-167859... 32 0.70
11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631 31 1.2
06_03_0124 - 16942492-16945032,16945478-16945572,16945966-169460... 29 6.6
04_04_0751 - 27769616-27769684,27769795-27769917,27769998-277707... 29 6.6
10_08_0829 - 20871810-20872011,20873226-20873359,20873480-208773... 28 8.7
05_03_0194 + 9547626-9547715,9549235-9549311,9549493-9549564,954... 28 8.7
03_06_0184 - 32188778-32188947,32189104-32189173,32189332-321894... 28 8.7
02_05_1071 - 33876061-33877308,33877593-33877898 28 8.7
>10_08_0136 -
15122420-15122469,15123845-15124334,15124822-15124935,
15125022-15125303,15125422-15125591,15125670-15125757,
15126128-15126173,15126254-15126336,15126595-15126694,
15127002-15127081,15127200-15127283,15127373-15127531,
15128617-15128772,15129634-15130197
Length = 821
Score = 90.6 bits (215), Expect = 1e-18
Identities = 44/86 (51%), Positives = 60/86 (69%), Gaps = 1/86 (1%)
Frame = +2
Query: 2 QGITCLIQISTDEGGDFIIDALAVREHIHK-LNVVFTDPKKLKVFHGADSDVLWLQRDFG 178
QG+TCL+QIST DFI+D L +R+++ L +F DP K KV HGAD D++WLQRDFG
Sbjct: 252 QGLTCLMQIST-RTEDFIVDTLKLRKYLGDYLREIFKDPTKKKVMHGADRDIIWLQRDFG 310
Query: 179 VYLVGLFDTYHAAKSLGLPALSLKFL 256
+Y+ LFDT A++ L + SL+ L
Sbjct: 311 IYVCNLFDTGQASRILQMDRNSLEHL 336
Score = 56.4 bits (130), Expect = 3e-08
Identities = 27/54 (50%), Positives = 36/54 (66%), Gaps = 2/54 (3%)
Frame = +3
Query: 516 LYIRSKKN--FDNQQMAALKMLYKWRDSQARQLDESTTYLLPNHMLLSLSENLP 671
LYI K FD +Q++ L +YKWRDS AR DEST Y+LPN LL +++ +P
Sbjct: 405 LYIHGLKENEFDARQLSVLANIYKWRDSVARGEDESTGYILPNKTLLEIAKQMP 458
Score = 56.0 bits (129), Expect = 4e-08
Identities = 22/62 (35%), Positives = 44/62 (70%)
Frame = +1
Query: 340 KYARMDTHYLLYVWRVMKNQIIEKNAGQTNMLLSVFEDSRQTCASTYNKEVIHDESPYHY 519
+YAR DTHYLLY++ +M+ +++++++ + ++LL V++ S++ C Y KE++ S Y Y
Sbjct: 348 EYAREDTHYLLYIYDLMRLRLVKESSDENDLLLEVYKRSKEICLQLYEKELL-THSSYLY 406
Query: 520 TY 525
+
Sbjct: 407 IH 408
>03_01_0397 +
3086142-3086489,3087097-3087252,3088043-3088201,
3088305-3088388,3089266-3089348,3089486-3089531,
3089825-3089912,3090009-3090178,3090317-3090430,
3090497-3090604,3090987-3091202
Length = 523
Score = 78.6 bits (185), Expect = 6e-15
Identities = 39/74 (52%), Positives = 49/74 (66%), Gaps = 1/74 (1%)
Frame = +2
Query: 2 QGITCLIQISTDEGGDFIIDALAVREHIHK-LNVVFTDPKKLKVFHGADSDVLWLQRDFG 178
QG+TCL+QIST DF++D L +R +I L F DP K KV HGAD D++WLQRDF
Sbjct: 180 QGLTCLMQIST-RTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFH 238
Query: 179 VYLVGLFDTYHAAK 220
+Y+ LFDT K
Sbjct: 239 IYVCNLFDTGQVQK 252
Score = 55.6 bits (128), Expect = 5e-08
Identities = 24/73 (32%), Positives = 44/73 (60%)
Frame = +3
Query: 516 LYIRSKKNFDNQQMAALKMLYKWRDSQARQLDESTTYLLPNHMLLSLSENLPRELQGVNA 695
+Y + + D +Q+A + L++WRD AR++DEST Y+LPN L+ +++ +P + +
Sbjct: 275 IYGLQEHDLDAKQLAVVYALHQWRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKR 334
Query: 696 CCDPMPPFVKQNV 734
PFV +N+
Sbjct: 335 MVKSKYPFVDENL 347
>07_03_0572 -
19604643-19604745,19604947-19605629,19605786-19606284,
19606370-19606878,19607110-19607148,19607347-19607411,
19609081-19609201,19610229-19610315,19611096-19611179,
19611925-19612175,19612869-19612962,19613043-19613284,
19614187-19614505
Length = 1031
Score = 61.7 bits (143), Expect = 8e-10
Identities = 25/49 (51%), Positives = 34/49 (69%)
Frame = +1
Query: 265 YCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQIIEK 411
YCGV TDKT + DWR+RPL +I+YAR D HYLLY+ + +++ K
Sbjct: 349 YCGVTTDKTMQREDWRLRPLTPEMIQYARCDAHYLLYIANCLASELHAK 397
Score = 59.3 bits (137), Expect = 4e-09
Identities = 25/43 (58%), Positives = 32/43 (74%)
Frame = +2
Query: 128 VFHGADSDVLWLQRDFGVYLVGLFDTYHAAKSLGLPALSLKFL 256
+FHGAD+DVLWLQRDF +Y+V +FDT A + L P SL +L
Sbjct: 303 IFHGADNDVLWLQRDFHIYVVNMFDTAKACEVLSKPQKSLAYL 345
Score = 33.1 bits (72), Expect = 0.30
Identities = 14/31 (45%), Positives = 20/31 (64%)
Frame = +3
Query: 582 WRDSQARQLDESTTYLLPNHMLLSLSENLPR 674
WRD AR DES Y+L + + SL+ ++PR
Sbjct: 430 WRDLMARMHDESLRYVLSDQAIASLAVSVPR 460
>07_03_0232 +
15539586-15539696,15541524-15541727,15542612-15542674,
15542896-15543027,15543766-15543889,15545052-15545365,
15545538-15545614,15545716-15545851,15546352-15546555,
15546630-15546689
Length = 474
Score = 38.3 bits (85), Expect = 0.008
Identities = 25/81 (30%), Positives = 40/81 (49%), Gaps = 1/81 (1%)
Frame = +1
Query: 202 HIPRSQVTRSARAFAQISLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVW 381
H + ++ R ++ A I + GV K + +DW RPL + I+YA D +YLL ++
Sbjct: 143 HDMQKRLPRETKSLATIC-EELLGVYLSKELQCSDWSYRPLSEGQIQYAASDAYYLLDIF 201
Query: 382 RVMKNQI-IEKNAGQTNMLLS 441
+ +I E TN L S
Sbjct: 202 DLFHQKIRTEGKCLPTNELTS 222
>05_03_0667 +
16781857-16782001,16784506-16784544,16785229-16785910,
16786003-16786087,16786747-16786888,16787391-16787575,
16788011-16788143,16788317-16788405,16788530-16788604,
16789060-16789173,16789264-16789305
Length = 576
Score = 31.9 bits (69), Expect = 0.70
Identities = 15/46 (32%), Positives = 25/46 (54%)
Frame = +1
Query: 262 KYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMKNQ 399
K G +KT R ++W RPL +YA +D L++++ +K Q
Sbjct: 501 KILGAGLNKTRRNSNWEQRPLTQNQKEYAALDAVVLVHIFHHVKGQ 546
>11_04_0345 + 16606739-16607055,16607129-16607462,16609029-16609631
Length = 417
Score = 31.1 bits (67), Expect = 1.2
Identities = 17/43 (39%), Positives = 19/43 (44%)
Frame = -2
Query: 212 RGMCRKDPPNTRRNHVEAKEHRYRHRGTPLVSWGQ*RRHSVYV 84
R M D PN R H KE H PL+SW + H YV
Sbjct: 259 RPMTDSDIPNLRFLHCVIKETLRMHPPGPLLSWARLAVHDTYV 301
>06_03_0124 -
16942492-16945032,16945478-16945572,16945966-16946076,
16946142-16946229
Length = 944
Score = 28.7 bits (61), Expect = 6.6
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = -1
Query: 543 RNSSSNVCIMVWALVVNHLFIVCRGASLTAVL 448
R SS +M+W + V L I CRG+ VL
Sbjct: 126 RRSSPTYLVMLWMISVASLLITCRGSIQKQVL 157
>04_04_0751 - 27769616-27769684,27769795-27769917,27769998-27770770,
27771407-27771773,27772104-27772217,27772307-27772403,
27772968-27773088,27773168-27773252,27773349-27773498,
27773630-27773746,27773819-27773905,27773981-27774049,
27774125-27774181,27774266-27774349,27774477-27774513,
27774721-27774869,27776053-27776538,27776743-27776886,
27776961-27777509,27778332-27778526,27779226-27779310,
27779570-27779670,27779689-27780360,27781101-27781433,
27781957-27782038,27782258-27782334,27782713-27782817,
27783810-27783944,27784437-27785159,27785882-27786663,
27787480-27789187
Length = 2891
Score = 28.7 bits (61), Expect = 6.6
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 41 GGDFIIDALAVREHIHKLNVVFTDPKKLKVFH 136
G D I R+ +H +V F D KLKVFH
Sbjct: 2800 GKDGISKQAETRQSVHVPSVCFVDLHKLKVFH 2831
>10_08_0829 - 20871810-20872011,20873226-20873359,20873480-20877313,
20878057-20878177,20878414-20878451,20879096-20879218,
20879308-20879505,20880270-20880356
Length = 1578
Score = 28.3 bits (60), Expect = 8.7
Identities = 13/35 (37%), Positives = 22/35 (62%)
Frame = +2
Query: 752 DLIVRELPKDAQIFHITVRHKEHDERRDRANTL*N 856
D+ ++E +++ +I HKEH+ER DR + L N
Sbjct: 986 DISLKEQSLLSELENIFQEHKEHEERIDRVHLLLN 1020
>05_03_0194 +
9547626-9547715,9549235-9549311,9549493-9549564,
9549648-9549719,9550047-9550118,9550199-9550225,
9550226-9550297,9550382-9550453,9550897-9550968,
9551047-9551121,9551226-9551297,9551384-9551449,
9551544-9551609,9551683-9551727,9551822-9551886,
9551971-9552350,9552419-9552545,9552688-9552846,
9552929-9553047,9553182-9553392,9553582-9553762,
9553845-9553995,9554086-9554448
Length = 901
Score = 28.3 bits (60), Expect = 8.7
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 357 YALSFVRLARYEESNNREECWTNEY 431
+AL V+ R++E N E CW N +
Sbjct: 19 WALGAVQWCRWQEGNKFERCWRNTF 43
>03_06_0184 -
32188778-32188947,32189104-32189173,32189332-32189473,
32189559-32189739,32189857-32190051,32190782-32190795,
32190815-32190864,32191493-32191519
Length = 282
Score = 28.3 bits (60), Expect = 8.7
Identities = 24/89 (26%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Frame = +3
Query: 510 IPLY---IRSK-KNFDNQQMAALKMLYKWRDSQARQLDESTTYLLPNHMLLSLSENLPRE 677
IP Y +R++ ++F A+L+ + R + + ES T + + ++ +++ENLP++
Sbjct: 3 IPRYGPPVRNRTRSFLISDYASLRPEIEVRYDKMLEHSESATEKIMSSIMDTIAENLPKQ 62
Query: 678 LQG---VNACCDPMPPFVKQNVITIHRMI 755
G V A D M + TIHR++
Sbjct: 63 KSGKFDVGAASDKMKEKLFGRQKTIHRVL 91
>02_05_1071 - 33876061-33877308,33877593-33877898
Length = 517
Score = 28.3 bits (60), Expect = 8.7
Identities = 14/44 (31%), Positives = 20/44 (45%)
Frame = -2
Query: 245 AKARADLVTWLRGMCRKDPPNTRRNHVEAKEHRYRHRGTPLVSW 114
A A A + W R R PP RR+ V + R + ++SW
Sbjct: 63 AAAAAAVERWARERGRVSPPELRRDVVRLRRARRYEQALEILSW 106
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,508,675
Number of Sequences: 37544
Number of extensions: 525254
Number of successful extensions: 1318
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1316
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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