Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120294.Seq
         (885 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0)                 100   2e-21
SB_29057| Best HMM Match : Rad9 (HMM E-Value=9.3e-10)                  32   0.54 
SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011)                  31   1.6  
SB_595| Best HMM Match : CH (HMM E-Value=0)                            29   3.8  
SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)                 29   6.6  
SB_3145| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   6.6  

>SB_33049| Best HMM Match : 3_5_exonuc (HMM E-Value=0)
          Length = 470

 Score =  100 bits (239), Expect = 2e-21
 Identities = 47/84 (55%), Positives = 59/84 (70%)
 Frame = +2

Query: 5   GITCLIQISTDEGGDFIIDALAVREHIHKLNVVFTDPKKLKVFHGADSDVLWLQRDFGVY 184
           G  CL+QIST +  DF++D L +R  +H LN  FT+P  LKVFHGAD DV WLQRDFG+Y
Sbjct: 9   GFVCLMQISTRDH-DFLVDTLELRNDLHLLNESFTNPNILKVFHGADMDVAWLQRDFGIY 67

Query: 185 LVGLFDTYHAAKSLGLPALSLKFL 256
           +V +FDT  A++ L L   SL FL
Sbjct: 68  VVNMFDTGQASRVLALERFSLAFL 91



 Score =   99 bits (238), Expect = 2e-21
 Identities = 48/108 (44%), Positives = 65/108 (60%)
 Frame = +1

Query: 214 SQVTRSARAFAQISLMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMDTHYLLYVWRVMK 393
           S+V    R      L K+CGV  DK Y+LADWRIRPLP+ +I+YAR DTHYLLY+   ++
Sbjct: 78  SRVLALERFSLAFLLKKFCGVTADKQYQLADWRIRPLPEEMIRYAREDTHYLLYIHDRLR 137

Query: 394 NQIIEKNAGQTNMLLSVFEDSRQTCASTYNKEVIHDESPYHYTYVRRR 537
           N++I       N+LLSV+  S + C   Y K +   ES Y   Y ++R
Sbjct: 138 NELIRTGNENNNLLLSVYSRSTEVCQKHYEKPLFTSES-YMNLYTKQR 184



 Score = 49.6 bits (113), Expect = 3e-06
 Identities = 31/89 (34%), Positives = 45/89 (50%)
 Frame = +3

Query: 516 LYIRSKKNFDNQQMAALKMLYKWRDSQARQLDESTTYLLPNHMLLSLSENLPRELQGVNA 695
           LY + ++  +  Q+ A + LY WRD+ AR+ DES                   E QGV A
Sbjct: 179 LYTKQRRPLNPVQLRAFRALYAWRDTIARREDESYG-----------------EPQGVLA 221

Query: 696 CCDPMPPFVKQNVITIHRMILSFANCRRT 782
           CC+P+P  VKQ V  +H++IL   +   T
Sbjct: 222 CCNPVPTLVKQYVNEVHQLILQSRDASTT 250


>SB_29057| Best HMM Match : Rad9 (HMM E-Value=9.3e-10)
          Length = 336

 Score = 32.3 bits (70), Expect = 0.54
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +1

Query: 271 GVDTDKTYRLADWRIRPLPD 330
           GVDTD T+ L + R+RPLPD
Sbjct: 238 GVDTDVTFCLKELRVRPLPD 257


>SB_36579| Best HMM Match : C1_1 (HMM E-Value=0.00011)
          Length = 633

 Score = 30.7 bits (66), Expect = 1.6
 Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -1

Query: 294 IRFIGVNAAILHQRNLSESAGRPSDLAAW--YVSKRPTKYTPKSR*SQRTSLSAPWNTFS 121
           I+   VNA ++  ++L   A  P D   W  Y+SK+  K  PKS+      +  P +T S
Sbjct: 571 IQKCNVNADLISAKDLLVLAPSPEDQKQWVLYLSKKIVKKEPKSKTPSMRQVYCPLSTVS 630


>SB_595| Best HMM Match : CH (HMM E-Value=0)
          Length = 905

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +1

Query: 256 LMKYCGVDTDKTYRLADWRIRPLPDVLIKYARMD 357
           +++  G+  DKT +++DW  RPL    + YA  D
Sbjct: 88  VLQCVGLPLDKTCQVSDWERRPLSQEQLTYADSD 121


>SB_42957| Best HMM Match : TSP_1 (HMM E-Value=6.1e-13)
          Length = 649

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 62  ALAVREHIHKLNVVFTDPKKLKVFHGADSDVL 157
           ++ V++H+HKL  V  D KK    HG    V+
Sbjct: 112 SIVVQKHLHKLEPVTADLKKRAALHGDGHHVI 143


>SB_3145| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1125

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 531 KKNFDNQQMAALKMLYKWRDSQARQLD 611
           +K  D  Q+  L  L KWR +Q +Q+D
Sbjct: 475 QKQLDKDQLVRLASLQKWRQTQNQQVD 501


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,197,056
Number of Sequences: 59808
Number of extensions: 617116
Number of successful extensions: 5223
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5047
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5223
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)