Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120294.Seq
         (885 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.70 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    23   2.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    23   2.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   3.7  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   3.7  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.4 bits (53), Expect = 0.70
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +2

Query: 71  VREHIHKLNVVFTDPKKLKVFHGAD 145
           ++ H H L + F DPK    FH A+
Sbjct: 507 LKGHAHWLTLHFKDPKVESAFHNAE 531


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 522 CIMVWALVVNHLFIVCRGASLTAVLEDRQ*HIR 424
           CI +WA V+  +FI+   + L + + + +  +R
Sbjct: 223 CIFIWAYVIPLIFIILFYSRLLSSIRNHEKMLR 255


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 23.4 bits (48), Expect = 2.8
 Identities = 9/33 (27%), Positives = 19/33 (57%)
 Frame = -1

Query: 522 CIMVWALVVNHLFIVCRGASLTAVLEDRQ*HIR 424
           CI +WA V+  +FI+   + L + + + +  +R
Sbjct: 223 CIFIWAYVIPLIFIILFYSRLLSSIRNHEKMLR 255


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +3

Query: 384 RYEESNNREECWTNEYATVGLRGQPSDLRL 473
           RY++S++  E W N      L  +  DLRL
Sbjct: 335 RYKDSSSSVEGWENRATIPELNEEFRDLRL 364


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.0 bits (47), Expect = 3.7
 Identities = 12/40 (30%), Positives = 19/40 (47%)
 Frame = +3

Query: 387 YEESNNREECWTNEYATVGLRGQPSDLRLYIQ*RGDSRRE 506
           +EE +   + WT E+ +  LR  P  + L+ Q  G    E
Sbjct: 19  FEEPSVMLKIWTEEFLSTILRLDPKFIALHCQEVGGKNYE 58


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 251,886
Number of Sequences: 438
Number of extensions: 6196
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28766349
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)