Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120293.Seq
         (753 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix...    25   0.86 
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    24   1.5  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    23   2.0  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   4.6  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    22   4.6  
AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      22   6.0  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      22   6.0  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   8.0  

>AJ457831-1|CAD29886.1|  249|Tribolium castaneum helix-loop-helix
           transcription factor protein.
          Length = 249

 Score = 24.6 bits (51), Expect = 0.86
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = +2

Query: 428 LGNHEKVEYIPLKLALNDDITSEPQQFASP 517
           LGN   V+ +P +LA  D     P Q ASP
Sbjct: 166 LGNGTGVQLVPTRLANGDIALVLPTQGASP 195


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 9/30 (30%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -1

Query: 144 LSCRRMY-THHTLLVYRVVAMIIQCVLSCL 58
           L+C  M  TH T+  ++++ ++  C ++CL
Sbjct: 195 LACGVMVVTHITMAHFKIIQVVPYCYINCL 224


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 23.4 bits (48), Expect = 2.0
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 316 NAASISNCVSSKPNHFCCINFC*QISCKHEFGRAILSVGQPRKG 447
           N +SIS C   K N  C IN   + +CK    R  L VG  + G
Sbjct: 35  NISSISEC---KNNGECVINKKNRTACKACRLRKCLLVGMSKSG 75


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 13/60 (21%), Positives = 20/60 (33%)
 Frame = -1

Query: 528 HFVNGLANCCGSLVISSLSANFNGMYSTFSWLPNR*YGTSKFMFTTYLLTEIYATKVVWL 349
           H V  L  C  +LVI+    + +  Y    W      G    +   +       T  +WL
Sbjct: 605 HIVPKLQLCMQNLVINPHQQHLDAWYWVMDWSDMLSVGNMTLILDKFFFPRWRQTLAMWL 664


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = -2

Query: 140 PAAECTRTTPCW 105
           P A CT +T CW
Sbjct: 524 PWANCTASTRCW 535


>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 133 QNVHAPHLVGVQSRRHDY 80
           +N H PH +  +SRR  Y
Sbjct: 600 RNFHGPHRLAARSRRCCY 617


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 133 QNVHAPHLVGVQSRRHDY 80
           +N H PH +  +SRR  Y
Sbjct: 492 RNFHGPHRLAARSRRCCY 509


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -2

Query: 464  STGCIPPFRGCPTDSMARPNSCLQLIC*QKFMQQKWF 354
            S+  +PP +   T S+  P S  +++C   F    W+
Sbjct: 1801 SSTVVPPPQHSTTQSLVDPKSEFKVVC--YFTNWAWY 1835


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,108
Number of Sequences: 336
Number of extensions: 3309
Number of successful extensions: 16
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20131186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)