Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120293.Seq
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    29   0.94 
SPAP27G11.15 |slx1||structure-specific endonuclease catalytic su...    28   1.6  
SPAC1786.03 |cut11|SPAC24C9.01|integral membrane nucleoporin|Sch...    27   2.9  
SPAC343.18 |rfp2||ubiquitin-protein ligase E3 Rfp2|Schizosacchar...    26   5.0  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    26   6.6  
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit...    25   8.8  

>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 28.7 bits (61), Expect = 0.94
 Identities = 19/53 (35%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = -2

Query: 470 PISTGCIPPFRGCPTDSMARPNSCLQLIC*QKFMQ-QKWFGFDETQFEILAAF 315
           P+S   IPP     TD ++  N    LIC    +Q    F FD  Q E L +F
Sbjct: 268 PLSPSIIPPLVSAITDRLSFDNIKPALICVGHLLQFCSSFEFDHEQLEKLESF 320


>SPAP27G11.15 |slx1||structure-specific endonuclease catalytic
           subunit |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 271

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 4/35 (11%)
 Frame = +2

Query: 116 WCVYILR----QDNGKLYTGITSNLNRRIKQHSNK 208
           +C Y+L+    Q +G +Y G T +  RR++QH+ +
Sbjct: 7   YCCYLLKSNRTQSSGAVYIGSTPDPPRRLRQHNGE 41


>SPAC1786.03 |cut11|SPAC24C9.01|integral membrane
           nucleoporin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 601

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 410 DVPYYRLGNHEKVEYIPLKLALNDDITSEPQQFASP 517
           ++PY    NHE++  IPL+   N +I   P Q  SP
Sbjct: 390 NIPYSPNSNHEEINSIPLR---NKNIFVPPSQGHSP 422


>SPAC343.18 |rfp2||ubiquitin-protein ligase E3
           Rfp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 205

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 294 CGRRFCSRTPRAVNTSRKLVALRKHLAPCLFECCFMRLLRLLVMPVY 154
           CG  FCS   +          LRK   PC  + C  R+ +  + P+Y
Sbjct: 167 CGHLFCSTCAKE---------LRKKTVPCPVQHCRKRITKKFIFPLY 204


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1583

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 234  ALRKHLAPCLFECCFMRLLRLLVMPV 157
            +L +H  PC+ + CF + LR  ++ +
Sbjct: 1298 SLMQHFLPCILDSCFSKNLRYSMLGI 1323


>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
           factor complex subunit Ysh1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 14/55 (25%), Positives = 24/55 (43%)
 Frame = +1

Query: 181 QTHKTAFEQTRRQVFAQRNQFTARVHSARRTTTKPPPAWNTILSVNAASISNCVS 345
           QT+        R++FA+RN F  R   + R   K      +++  +   + N VS
Sbjct: 308 QTYVNMMNDNIRKIFAERNPFIFRFVKSLRNLEKFDDIGPSVILASPGMLQNGVS 362


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,624,707
Number of Sequences: 5004
Number of extensions: 49232
Number of successful extensions: 137
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)