Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120293.Seq
         (753 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0447 - 25297351-25297575,25297663-25298370,25298824-252991...    31   0.74 
07_01_0879 - 7290890-7291694,7291810-7291943,7292089-7292227,729...    30   2.3  
03_01_0515 - 3864796-3865425                                           28   9.2  

>04_04_0447 - 25297351-25297575,25297663-25298370,25298824-25299123,
            25299876-25299927,25300530-25300673,25301002-25301258,
            25301533-25301739,25301819-25301992,25302409-25302432,
            25302610-25302677,25304607-25304665,25304802-25304877,
            25304965-25305070,25305268-25305377,25305831-25305995,
            25306571-25306656,25306893-25306957,25307280-25307330,
            25309009-25309056,25309677-25309796,25310226-25310301,
            25310780-25310877,25312149-25312404,25313117-25313238
          Length = 1198

 Score = 31.5 bits (68), Expect = 0.74
 Identities = 15/53 (28%), Positives = 31/53 (58%)
 Frame = +2

Query: 122  VYILRQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVFTARGVRLQ 280
            +Y++ + + KLY G T +L  R+  H +K+G   +++AT L ++   + +  Q
Sbjct: 1110 IYVIIRRDSKLYIGQTDDLVGRLSAHRSKEG---MQDATILYILVPGKSIACQ 1159


>07_01_0879 -
           7290890-7291694,7291810-7291943,7292089-7292227,
           7292338-7292585
          Length = 441

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 4/37 (10%)
 Frame = +2

Query: 110 KVWCVYILR----QDNGKLYTGITSNLNRRIKQHSNK 208
           + +C Y+LR    +  G  Y G T N  RRI+QH+ +
Sbjct: 62  RFFCCYLLRSLCPRRKGSTYIGFTVNPRRRIRQHNGE 98


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 15/61 (24%), Positives = 27/61 (44%)
 Frame = +1

Query: 268 RTTTKPPPAWNTILSVNAASISNCVSSKPNHFCCINFC*QISCKHEFGRAILSVGQPRKG 447
           +++  PPPAW+ + +VN  +I      +   F   ++C     K  +   +    QP  G
Sbjct: 113 KSSPPPPPAWSPVTNVNDYTI-----QQVGKFAVQSYCLNTGAKLVYVNVVSGQTQPCSG 167

Query: 448 G 450
           G
Sbjct: 168 G 168


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,245,605
Number of Sequences: 37544
Number of extensions: 328931
Number of successful extensions: 901
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 880
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)