Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120293.Seq
         (753 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)             31   0.76 
SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_25412| Best HMM Match : rve (HMM E-Value=1.6e-05)                   29   5.4  
SB_39764| Best HMM Match : YscO (HMM E-Value=1.5)                      28   7.1  
SB_27807| Best HMM Match : C2 (HMM E-Value=0)                          28   7.1  
SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_36161| Best HMM Match : SecIII_SopE_N (HMM E-Value=4.1)
          Length = 535

 Score = 31.5 bits (68), Expect = 0.76
 Identities = 12/43 (27%), Positives = 23/43 (53%)
 Frame = +1

Query: 166 HEQP*QTHKTAFEQTRRQVFAQRNQFTARVHSARRTTTKPPPA 294
           H Q  Q+HK +  + R+  FA  + +    +S+ +  + PPP+
Sbjct: 41  HSQDLQSHKDSKTEERKSAFASSDSWNVTSNSSNQQNSSPPPS 83


>SB_32061| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 919

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 13/48 (27%), Positives = 24/48 (50%)
 Frame = +2

Query: 125 YILRQDNGKLYTGITSNLNRRIKQHSNKQGAKCLRNATNLRLVFTARG 268
           + L QD+ ++ + I S   R+  +H  +    C R+   L+ V+T  G
Sbjct: 175 FFLYQDDQEVESKIESTSGRKTVKHKERVSRNCARDVQGLKRVYTGPG 222


>SB_43151| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1719

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 59   KHERTHCIIMATTLYTNKVWCVYILRQDNGKLYTGITSNLNRR 187
            KH+R  C++    L  N  + ++I+  D+ K     + +L RR
Sbjct: 1471 KHKRNLCVMNVVLLVPNVYYSLHIVLHDDAKCVANTSFDLRRR 1513


>SB_25412| Best HMM Match : rve (HMM E-Value=1.6e-05)
          Length = 508

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 337 CVSSKPNHFCCINFC*QISCKHEFGRAILSVGQPRKGGIHPVEI 468
           C++S+PNH C    C Q++ ++     +L+V       +H +++
Sbjct: 442 CLNSEPNHPCGHGCCQQLAYRYSVNSGLLTVTNEGYAVLHTLKL 485


>SB_39764| Best HMM Match : YscO (HMM E-Value=1.5)
          Length = 182

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 15/60 (25%), Positives = 31/60 (51%)
 Frame = +1

Query: 103 HQQGVVRVHSAAGQWKIVHGHHEQP*QTHKTAFEQTRRQVFAQRNQFTARVHSARRTTTK 282
           + Q   R+H  + ++ I+H + ++  +THK + E TR     + +Q   R+H   +  T+
Sbjct: 35  NSQEFTRIHKNSQEFTIIHKNSQELTRTHKNSQEFTR---IHKNSQEFIRIHKNSQELTR 91


>SB_27807| Best HMM Match : C2 (HMM E-Value=0)
          Length = 405

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 24/87 (27%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
 Frame = +3

Query: 84  SWRRLCTPTRCGACTFCG-RTMENCTRASRATLTDA*NSIRTNKAPSVCATQPIYGSCSQ 260
           SW R C  T     T  G  T ++ + +  +T      S+ T K P      PIY   S 
Sbjct: 39  SWCRKCWKTSKAQETEIGTETFDSSSESLASTPKQKYQSLYTGKKPVGSTYDPIY---SH 95

Query: 261 REAYDYKTAARMEYNLKRKCSKYFKLR 341
           R  YD     R      R  S+ F+ +
Sbjct: 96  RSGYDSPDYMRSTLKFNRPPSQEFEFQ 122


>SB_54821| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 528

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = +2

Query: 56  AKHERTHCIIMATTLYTNKVWCVYILRQDNGKLYTGITSNLNRRI 190
           A H    C ++ T  +   V CV IL    G LYTG  S L+  I
Sbjct: 237 ASHRLLFCSLIGTGYHLALVACVVILFTIMGDLYTGRGSILSATI 281


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,407,126
Number of Sequences: 59808
Number of extensions: 402703
Number of successful extensions: 1260
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1136
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1257
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2046258890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)