Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120293.Seq
         (753 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL034489-10|CAA22464.2|  272|Caenorhabditis elegans Hypothetical...    28   6.2  
AF099925-10|AAC69504.1|  138|Caenorhabditis elegans Fatty acid/r...    28   6.2  

>AL034489-10|CAA22464.2|  272|Caenorhabditis elegans Hypothetical
           protein Y7A5A.3 protein.
          Length = 272

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +2

Query: 191 KQHSNKQGAKCLRNATNLRLVFTARGVRL 277
           KQHSNK GA C++  TN+  +  A G+++
Sbjct: 168 KQHSNKNGA-CVQVHTNMYPIKVATGMKM 195


>AF099925-10|AAC69504.1|  138|Caenorhabditis elegans Fatty
           acid/retinol binding proteinprotein 7, isoform a
           protein.
          Length = 138

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 5/57 (8%)
 Frame = +1

Query: 385 QISCKH-EFGRAILSV---GQPRKGGIHPVEIG-AQR*YHQRTATICEPVYKMPIDD 540
           ++S KH E G+ + +V    + R  G+ P  +  A++  H  T T+C      PIDD
Sbjct: 52  EVSKKHPELGKRLATVLEGNKKRLDGLSPAAVEYAKKLIHMVTTTLCSLTVGKPIDD 108


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,967,097
Number of Sequences: 27780
Number of extensions: 295080
Number of successful extensions: 873
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 873
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1788025660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)