Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120293.Seq
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) ...    36   0.022
At5g43210.1 68418.m05280 endo/excinuclease amino terminal domain...    33   0.15 
At3g49800.1 68416.m05445 BSD domain-containing protein contains ...    28   5.8  

>At3g24320.1 68416.m03054 DNA mismatch repair MutS family (MSH1) low
            similarity to SP|Q56239 DNA mismatch repair protein mutS
            {Thermus aquaticus}; contains Pfam profiles PF05190: MutS
            family domain IV, PF01624: MutS domain I, PF01541:
            Endo/excinuclease amino terminal domain
          Length = 1118

 Score = 36.3 bits (80), Expect = 0.022
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +2

Query: 119  CVYILRQDNGKLYTGITSNLNRRIKQHSNKQG 214
            CVY++R+ + +LY G T +L  RI+ H  K+G
Sbjct: 1026 CVYVMRRPDKRLYIGQTDDLEGRIRAHRAKEG 1057


>At5g43210.1 68418.m05280 endo/excinuclease amino terminal
           domain-containing protein contains Pfam domain PF01541:
           Endo/excinuclease amino terminal domain
          Length = 170

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 4/42 (9%)
 Frame = +2

Query: 107 NKVWCVYILRQDNG--KLYTGITSNLNRRIKQHSN--KQGAK 220
           +K W VY++       K Y GIT++ +RR+KQH+   + GAK
Sbjct: 51  SKSWSVYLILSTTEPIKTYVGITTDFSRRLKQHNGEIRGGAK 92


>At3g49800.1 68416.m05445 BSD domain-containing protein contains
           Pfam profile PF03909: BSD domain
          Length = 428

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -1

Query: 255 NTSRKLVALRKHLAPC-LFECCFMRLLRLLVMPVYN 151
           N +  L ALR  L P  + E CF R+  +LV P+++
Sbjct: 213 NLASSLAALRIELCPAYMSEYCFWRIYFVLVHPIFS 248


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,778,560
Number of Sequences: 28952
Number of extensions: 258800
Number of successful extensions: 620
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 609
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 620
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)