Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120292X.Seq
         (552 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    26   3.2  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   4.2  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   5.6  
SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces ...    25   7.4  
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy...    25   7.4  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   7.4  

>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = -3

Query: 124 ASFDNGYSE-FCDKQQPNDYLN 62
           AS+D+   E +CDK  P DYLN
Sbjct: 348 ASYDSVDMETYCDKHTPPDYLN 369


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 187 QTTMTQINFNASYTSAPTPSRASF 116
           Q +  + +FNA+   APTPS A+F
Sbjct: 869 QPSYEEESFNATVIHAPTPSTATF 892


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 4/54 (7%)
 Frame = +3

Query: 276 HDNNIFFIMPSKTNAVIIYPFKLDTEHPPTYNV----NAKTRLVSGYENSRPIN 425
           HD  +F  +     A +IY F   TE    Y V       T + + YE + P++
Sbjct: 769 HDKIVFLEVWKSIMAALIYVFSTATEDTVFYRVVNGIQQATEVAAAYELNEPVD 822


>SPBC543.03c |pku80||Ku domain protein Pku80|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -3

Query: 91  DKQQPNDYLNYYNNPTPDGADTVVSD 14
           D  QPN YL  Y NP     D  + D
Sbjct: 503 DLPQPNIYLTRYTNPPKSLLDNCILD 528


>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 973

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 12/31 (38%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -3

Query: 427 IFIGRLFSYPLTKRVFALTLYVGG-CSVSNL 338
           +F GRL + P+ +  FAL + +GG  + SN+
Sbjct: 487 VFPGRLGTLPVFQNQFALPINIGGYANASNV 517


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 299  YAL*NQCGYHLSIQIRYRTSADIQ 370
            Y + NQ GY+LSIQ     S+++Q
Sbjct: 1750 YVILNQTGYNLSIQYGNLNSSEMQ 1773


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,125,284
Number of Sequences: 5004
Number of extensions: 42324
Number of successful extensions: 131
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)