Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120292X.Seq
         (552 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0170 + 15310240-15310397,15310523-15310605,15310689-153106...    29   3.3  
10_08_0198 + 15688142-15690427,15690524-15690607,15691232-156913...    27   7.5  
06_01_0926 - 7139220-7139318,7139394-7139478,7139573-7139643,713...    27   7.5  
08_01_0453 + 4005027-4005543,4006795-4006931                           27   10.0 

>09_04_0170 +
           15310240-15310397,15310523-15310605,15310689-15310697,
           15310852-15310940,15311514-15311587,15311731-15311781,
           15311887-15311963,15313865-15314463
          Length = 379

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 18/52 (34%), Positives = 26/52 (50%)
 Frame = -3

Query: 187 QTTMTQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGA 32
           +TT T     +S  S+P+P +A+ D+G S  C    P D   Y+     DGA
Sbjct: 302 ETTTTSSTTTSS--SSPSPPQATKDDGASPQC--SFPEDIQTYFGCAAEDGA 349


>10_08_0198 +
           15688142-15690427,15690524-15690607,15691232-15691336,
           15691420-15691528,15693037-15693188,15693278-15693583
          Length = 1013

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 3/17 (17%)
 Frame = -2

Query: 215 HW---RRHDREQPNDYD 174
           HW   +RHD ++PNDYD
Sbjct: 320 HWGSRQRHDSKEPNDYD 336


>06_01_0926 -
           7139220-7139318,7139394-7139478,7139573-7139643,
           7139996-7140076,7140805-7140895,7141242-7141330,
           7141749-7141802,7141906-7142085,7142175-7142237,
           7142575-7142705,7142807-7142900,7143343-7143684,
           7143957-7144348,7145010-7148487,7149101-7149187,
           7149324-7149367,7149495-7149591,7150429-7150572
          Length = 1873

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +3

Query: 231 NNIQHERQLYCPNGEHDNNIFFIMPSKTNAVIIYP-FKLDTEHPPTY 368
           NN+ HE +LYC    H + +F +  + +N     P  K+D E  P +
Sbjct: 150 NNVTHEGKLYCKT--HHSQLFMVKGNFSNFEDSTPNAKVDIEKQPEH 194


>08_01_0453 + 4005027-4005543,4006795-4006931
          Length = 217

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 536 VYLLYVNTSHKGRRANAADHVRSSCPVQGR 447
           +Y+ +VNT H  RRA AA+    +  V+GR
Sbjct: 32  IYITFVNTEHNHRRALAAE---GAAAVRGR 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,747,405
Number of Sequences: 37544
Number of extensions: 267894
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 629
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)