Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120292X.Seq
         (552 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   0.47 
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)             31   0.83 
SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.4  
SB_3217| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   4.4  
SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036)         28   4.4  
SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)                28   4.4  
SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_2104| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   7.7  

>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1362

 Score = 31.5 bits (68), Expect = 0.47
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 43   AWDCYNNSNSRWAVVYHKTLNSRCRTXLGTASE 141
            AW  YN + ++W VVY KT   + R  L    E
Sbjct: 1207 AWKIYNETKNKWYVVYTKTAEQKERWRLAFTEE 1239


>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
          Length = 1425

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +1

Query: 31  RLHPAWDCYNNSNSRWAVVYHKTL 102
           RLH  W C ++  S  A++YH TL
Sbjct: 800 RLHHTWSCLHHQYSSSAIMYHSTL 823


>SB_6365| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1017

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 7/70 (10%)
 Frame = -3

Query: 223 QVDIGGDTIVNNQTTM---TQINFNASY-TSAPTPSRASFD--NGYSEFCDKQQPNDYLN 62
           + DI GD  + ++      T+      Y   +PTP R   +  + +   CD   P   LN
Sbjct: 434 KTDIFGDGFIGSENLTCHSTEFKVYGDYWVPSPTPYRLPGEKIDIFGVKCDLPDPPTKLN 493

Query: 61  YYNNP-TPDG 35
            YNNP TP G
Sbjct: 494 DYNNPGTPAG 503


>SB_3217| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 87

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 345 DTEHPPTYNVNAKTRLVSGYENSRPININPRSITPSLNGTRGAYVISCIR 494
           D E  PT +    T   S   NSR  N  P + T ++ GT+ A+  S  R
Sbjct: 6   DVELQPTSSFGTATSAQSTNHNSRGSNYQPVAQTWAVGGTKHAFTSSARR 55


>SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036)
          Length = 618

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 9/14 (64%), Positives = 13/14 (92%)
 Frame = -2

Query: 479 HVRSSCPVQGRCYR 438
           H+ SSCPV+GRC++
Sbjct: 88  HLISSCPVRGRCFK 101


>SB_640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 917

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +3

Query: 345 DTEHPPTYNVNAKTRLVSGYENSRPININPRSITPSLNGTRGAYVISCIR 494
           D E  PT +    T   S   NSR  N  P + T ++ GT+ A+  S  R
Sbjct: 73  DVELQPTSSFGTATSAQSTNHNSRGSNYQPVAQTWAVGGTKHAFTSSARR 122


>SB_41020| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1229

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/37 (40%), Positives = 22/37 (59%)
 Frame = +3

Query: 384 TRLVSGYENSRPININPRSITPSLNGTRGAYVISCIR 494
           TRLV+   +S  +N++  S TPS+  T  A V S I+
Sbjct: 576 TRLVTSTISSSTVNVSAISTTPSIESTIMASVASSIQ 612


>SB_2104| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1219

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 17/63 (26%), Positives = 24/63 (38%)
 Frame = +3

Query: 294 FIMPSKTNAVIIYPFKLDTEHPPTYNVNAKTRLVSGYENSRPININPRSITPSLNGTRGA 473
           FI  +K +A  +    L  +HP   +V   T          P  +NP    P L  TR  
Sbjct: 735 FIRNTKDHAEELVRESLPMQHPQPVSVELDTGSTDENHLPTPPEVNPEVAQPPLRTTRSG 794

Query: 474 YVI 482
            +I
Sbjct: 795 RII 797


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,405,188
Number of Sequences: 59808
Number of extensions: 326423
Number of successful extensions: 992
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 873
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 992
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1276425465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)