Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120292X.Seq
         (552 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC068536-1|AAH68536.1|  345|Homo sapiens KHDRBS3 protein protein.      30   4.7  
BC032606-1|AAH32606.1|  346|Homo sapiens KH domain containing, R...    30   4.7  
AJ506502-1|CAD44735.1|   81|Homo sapiens immunoglobulin kappa li...    30   4.7  
AF069681-1|AAC24857.1|  346|Homo sapiens T-Star protein.               30   4.7  
AF051321-1|AAC99294.1|  346|Homo sapiens Sam68-like phosphotyros...    30   4.7  
AJ634527-1|CAG24081.1|  242|Homo sapiens single chain variable f...    30   6.2  

>BC068536-1|AAH68536.1|  345|Homo sapiens KHDRBS3 protein protein.
          Length = 345

 Score = 30.3 bits (65), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 118 FDNGYSEFCDKQQPNDYLNYYNNPTPDGAD 29
           +D+GY    D+Q  + Y N Y+ P   GAD
Sbjct: 270 YDDGYGTAYDEQSYDSYDNSYSTPAQSGAD 299


>BC032606-1|AAH32606.1|  346|Homo sapiens KH domain containing, RNA
           binding, signal transduction associated 3 protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 118 FDNGYSEFCDKQQPNDYLNYYNNPTPDGAD 29
           +D+GY    D+Q  + Y N Y+ P   GAD
Sbjct: 271 YDDGYGTAYDEQSYDSYDNSYSTPAQSGAD 300


>AJ506502-1|CAD44735.1|   81|Homo sapiens immunoglobulin kappa light
           chain variable region protein.
          Length = 81

 Score = 30.3 bits (65), Expect = 4.7
 Identities = 16/39 (41%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = -3

Query: 163 FNASYTSAPTPSRASFDNGYSEF---CDKQQPNDYLNYY 56
           F ASY  A  PSR S     +EF       QP+D+  YY
Sbjct: 32  FKASYLEAGVPSRFSASGSATEFTLTISSLQPDDFATYY 70


>AF069681-1|AAC24857.1|  346|Homo sapiens T-Star protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 118 FDNGYSEFCDKQQPNDYLNYYNNPTPDGAD 29
           +D+GY    D+Q  + Y N Y+ P   GAD
Sbjct: 271 YDDGYGTAYDEQSYDSYDNSYSTPAQSGAD 300


>AF051321-1|AAC99294.1|  346|Homo sapiens Sam68-like phosphotyrosine
           protein alpha protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 4.7
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -3

Query: 118 FDNGYSEFCDKQQPNDYLNYYNNPTPDGAD 29
           +D+GY    D+Q  + Y N Y+ P   GAD
Sbjct: 271 YDDGYGTAYDEQSYDSYDNSYSTPAQSGAD 300


>AJ634527-1|CAG24081.1|  242|Homo sapiens single chain variable
           fragment antibody protein.
          Length = 242

 Score = 29.9 bits (64), Expect = 6.2
 Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 3/49 (6%)
 Frame = -3

Query: 163 FNASYTSAPTPSRASFDNGYSEFC---DKQQPNDYLNYYNNPTPDGADT 26
           + ASY  +  PSR S     ++F       QP D+  YY   T D  +T
Sbjct: 183 YGASYMQSGVPSRFSGSGSGTDFTLTISSLQPEDFATYYCQQTADAPNT 231


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,975,603
Number of Sequences: 237096
Number of extensions: 1461014
Number of successful extensions: 2879
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2879
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5477474182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)