Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120292X.Seq
         (552 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical pr...    30   1.3  
X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic int...    29   2.2  
U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate fi...    29   2.2  
U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate fi...    29   2.2  
AC024777-4|AAF60561.3|  627|Caenorhabditis elegans Hypothetical ...    29   2.9  
L15314-4|AAF99988.2|  618|Caenorhabditis elegans Hypothetical pr...    28   5.1  

>Z69659-1|CAA93483.1|  329|Caenorhabditis elegans Hypothetical
           protein F07C6.1 protein.
          Length = 329

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = +2

Query: 311 NQCGYHLSIQIRYRTSADIQC*CKNTFGERIRKQSADKY*SEVDNTVL 454
           ++C  HL+ QI YR    I C   N    ++R  + +K    VDN+ L
Sbjct: 108 DECNVHLNSQIAYRYQGTILCFLCNQKKPKMRIYNCNKCKQHVDNSDL 155


>X70836-1|CAA50184.1|  636|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 636

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 214 IGGDTIVNNQTTMTQINFNASYTSAPTPSRASF 116
           +GG T V +QTT T  + N SY++ P  SR  +
Sbjct: 417 VGGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 448


>U56860-4|AAM69100.1| 1128|Caenorhabditis elegans Intermediate
            filament, c protein2, isoform a protein.
          Length = 1128

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 214  IGGDTIVNNQTTMTQINFNASYTSAPTPSRASF 116
            +GG T V +QTT T  + N SY++ P  SR  +
Sbjct: 1043 VGGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 1074


>U56860-3|AAM69101.1| 1248|Caenorhabditis elegans Intermediate
            filament, c protein2, isoform b protein.
          Length = 1248

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -3

Query: 214  IGGDTIVNNQTTMTQINFNASYTSAPTPSRASF 116
            +GG T V +QTT T  + N SY++ P  SR  +
Sbjct: 1043 VGGSTRVISQTTRTHSSSNTSYSNVPA-SRGGY 1074


>AC024777-4|AAF60561.3|  627|Caenorhabditis elegans Hypothetical
           protein Y42H9AR.4 protein.
          Length = 627

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 14/47 (29%), Positives = 23/47 (48%)
 Frame = +3

Query: 333 PFKLDTEHPPTYNVNAKTRLVSGYENSRPININPRSITPSLNGTRGA 473
           P+K     PP  +           +NS+ ++I+   I+P+ NGTR A
Sbjct: 216 PWKYRKRAPPPASRRKSLNTSLNGKNSKKVSISNEVISPTTNGTRSA 262


>L15314-4|AAF99988.2|  618|Caenorhabditis elegans Hypothetical
           protein K06H7.3 protein.
          Length = 618

 Score = 27.9 bits (59), Expect = 5.1
 Identities = 17/49 (34%), Positives = 25/49 (51%)
 Frame = -2

Query: 524 YVNTSHKGRRANAADHVRSSCPVQGRCYRPRINIYRPTVFVSAHQTCFC 378
           YVN S + +RA A D   +  P   RC++  + +  PT F  +H   FC
Sbjct: 558 YVNMSEREKRALAVDRRLAGLPPILRCHQCGVQL-PPTPFQYSHYN-FC 604


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,965,228
Number of Sequences: 27780
Number of extensions: 248207
Number of successful extensions: 713
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1123720628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)