Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120292X.Seq
         (552 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        24   1.2  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   3.6  
DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.              21   6.3  
DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.              21   6.3  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   6.3  

>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 13/64 (20%), Positives = 26/64 (40%)
 Frame = -3

Query: 193 NNQTTMTQINFNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSD 14
           ++Q   +  N         +P+ AS ++  S         +Y   +N+P+P G+    S 
Sbjct: 14  HHQQLFSSANPGTIQACTTSPATASLESSLSAAAVAAAAVNYAQQHNSPSPTGSSPQHSG 73

Query: 13  SETA 2
           S  +
Sbjct: 74  SSAS 77


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 3.6
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = +3

Query: 330 YPFKLDTEHPPTYNVNAKTRLVSGYENSRP 419
           Y  K  TE PP+YN       +  +  S+P
Sbjct: 530 YDSKSSTETPPSYNQLNYNENIERFFKSKP 559


>DQ435337-1|ABD92652.1|  135|Apis mellifera OBP20 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 325 ITALVL-EGIIKKILLSCSPLGQYN 254
           +T++ L E +IKK++  CS +   N
Sbjct: 87  LTSIYLDENVIKKLVAECSVISDAN 111


>DQ435336-1|ABD92651.1|  135|Apis mellifera OBP19 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 9/25 (36%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 325 ITALVL-EGIIKKILLSCSPLGQYN 254
           +T++ L E +IKK++  CS +   N
Sbjct: 87  LTSIYLDENVIKKLVAECSVISDAN 111


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 355 CSVSNLNG*MITALVLEGIIKKILLSCSPLGQYN*RS 245
           CS     G ++TAL+  G +KK  L  S +     RS
Sbjct: 327 CSNHIGRGKLVTALIQRGTLKKGCLLVSGIASAKVRS 363


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,258
Number of Sequences: 438
Number of extensions: 3255
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15827139
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)