BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120292X.Seq (552 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g66340.1 68414.m07534 ethylene receptor 1 (ETR1) identical to... 31 0.51 At2g03140.1 68415.m00267 CAAX amino terminal protease family pro... 29 1.6 At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50... 29 2.7 At3g17910.1 68416.m02281 surfeit 1 (SURF1) identical to Surfeit ... 28 4.8 At5g21080.1 68418.m02510 expressed protein predicted proteins - ... 27 6.3 At4g23300.1 68417.m03358 protein kinase family protein contains ... 27 8.3 >At1g66340.1 68414.m07534 ethylene receptor 1 (ETR1) identical to GB:P49333 from [Arabidopsis thaliana] (Science 262 (5133), 539-544 (1993)) Length = 738 Score = 31.1 bits (67), Expect = 0.51 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%) Frame = +3 Query: 300 MPSKTNAVIIYPFKLDTEHPPTYNVNAKTRLVSG-YENSRPININPRSITPSLNGTRGAY 476 MP++T + + L +HP Y V + +++ + SR + I+P S L G Y Sbjct: 183 MPTRTGLELQLSYTLRHQHPVEYTVPIQLPVINQVFGTSRAVKISPNSPVARLRPVSGKY 242 Query: 477 VI 482 ++ Sbjct: 243 ML 244 >At2g03140.1 68415.m00267 CAAX amino terminal protease family protein very low similarity to SP|Q40863 Late embryogenesis abundant protein EMB8 from Picea glauca; contains Pfam profile PF02517 CAAX amino terminal protease family protein Length = 1805 Score = 29.5 bits (63), Expect = 1.6 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Frame = -3 Query: 223 QVDIGGDTIVNNQTTMTQINFNASY-----TSAPTPSRASFDNGYSEFCDK-QQPNDYLN 62 Q IG + + NN + Q + A++ TS A N S D ++ +D N Sbjct: 776 QGPIGAEAVTNNDDKVEQGSGVATHQGQVETSKNDEKGAPIANEKSSVADGFEKASDAKN 835 Query: 61 YYNNPTPDGADTVVSDSE 8 NP P GAD + SD + Sbjct: 836 DSTNPQPVGADDITSDGD 853 >At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50) identical to DNA repair-recombination protein GI:7110148 from [Arabidopsis thaliana] Length = 1316 Score = 28.7 bits (61), Expect = 2.7 Identities = 9/15 (60%), Positives = 11/15 (73%) Frame = +1 Query: 34 LHPAWDCYNNSNSRW 78 L AWDCY ++N RW Sbjct: 423 LSTAWDCYMDANDRW 437 >At3g17910.1 68416.m02281 surfeit 1 (SURF1) identical to Surfeit 1 GB:AAF19609 from [Arabidopsis thaliana] Length = 354 Score = 27.9 bits (59), Expect = 4.8 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Frame = +3 Query: 333 PFKLDTEHPPTYNVNA-KTRLVS---GYENSRPININPRSITPSLNGTRGAYVIS 485 P KL+ +HP N+NA + R VS ++ R I + PRS + S G +VI+ Sbjct: 114 PIKLNIDHPLDKNLNALEFRRVSCKGVFDEQRSIYLGPRSRSISGITENGFFVIT 168 >At5g21080.1 68418.m02510 expressed protein predicted proteins - Arabidopsis thaliana; expression supported by MPSS Length = 980 Score = 27.5 bits (58), Expect = 6.3 Identities = 14/53 (26%), Positives = 23/53 (43%) Frame = +3 Query: 306 SKTNAVIIYPFKLDTEHPPTYNVNAKTRLVSGYENSRPININPRSITPSLNGT 464 S++ + I D E P + +RL S Y S+ + NP S+ N + Sbjct: 548 SRSTSKFIRGESFDDEEPKNNTSSVLSRLKSSYSRSQSVKRNPSSMVADQNSS 600 >At4g23300.1 68417.m03358 protein kinase family protein contains Pfam domain, PF00069: Protein kinase domain Length = 660 Score = 27.1 bits (57), Expect = 8.3 Identities = 17/53 (32%), Positives = 27/53 (50%) Frame = +3 Query: 159 LKLICVIVVWLFTIVSPPMSTCN*NNIQHERQLYCPNGEHDNNIFFIMPSKTN 317 L ++C I++ F + S TC N R+ + PNG +D+N I+ S N Sbjct: 7 LSILCFILL-AFGVASVSAQTCIEN-----RKYFTPNGTYDSNRRLILSSLPN 53 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 10,939,387 Number of Sequences: 28952 Number of extensions: 215617 Number of successful extensions: 600 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 592 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 600 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1043173136 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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