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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120292X.Seq
         (552 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g66340.1 68414.m07534 ethylene receptor 1 (ETR1) identical to...    31   0.51 
At2g03140.1 68415.m00267 CAAX amino terminal protease family pro...    29   1.6  
At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50...    29   2.7  
At3g17910.1 68416.m02281 surfeit 1 (SURF1) identical to Surfeit ...    28   4.8  
At5g21080.1 68418.m02510 expressed protein predicted proteins - ...    27   6.3  
At4g23300.1 68417.m03358 protein kinase family protein contains ...    27   8.3  

>At1g66340.1 68414.m07534 ethylene receptor 1 (ETR1) identical to
           GB:P49333 from [Arabidopsis thaliana] (Science 262
           (5133), 539-544 (1993))
          Length = 738

 Score = 31.1 bits (67), Expect = 0.51
 Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
 Frame = +3

Query: 300 MPSKTNAVIIYPFKLDTEHPPTYNVNAKTRLVSG-YENSRPININPRSITPSLNGTRGAY 476
           MP++T   +   + L  +HP  Y V  +  +++  +  SR + I+P S    L    G Y
Sbjct: 183 MPTRTGLELQLSYTLRHQHPVEYTVPIQLPVINQVFGTSRAVKISPNSPVARLRPVSGKY 242

Query: 477 VI 482
           ++
Sbjct: 243 ML 244


>At2g03140.1 68415.m00267 CAAX amino terminal protease family protein
            very low similarity to SP|Q40863 Late embryogenesis
            abundant protein EMB8 from Picea glauca; contains Pfam
            profile PF02517 CAAX amino terminal protease family
            protein
          Length = 1805

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 23/78 (29%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
 Frame = -3

Query: 223  QVDIGGDTIVNNQTTMTQINFNASY-----TSAPTPSRASFDNGYSEFCDK-QQPNDYLN 62
            Q  IG + + NN   + Q +  A++     TS      A   N  S   D  ++ +D  N
Sbjct: 776  QGPIGAEAVTNNDDKVEQGSGVATHQGQVETSKNDEKGAPIANEKSSVADGFEKASDAKN 835

Query: 61   YYNNPTPDGADTVVSDSE 8
               NP P GAD + SD +
Sbjct: 836  DSTNPQPVGADDITSDGD 853


>At2g31970.1 68415.m03906 DNA repair-recombination protein (RAD50)
           identical to DNA repair-recombination protein GI:7110148
           from [Arabidopsis thaliana]
          Length = 1316

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 34  LHPAWDCYNNSNSRW 78
           L  AWDCY ++N RW
Sbjct: 423 LSTAWDCYMDANDRW 437


>At3g17910.1 68416.m02281 surfeit 1 (SURF1) identical to Surfeit 1
           GB:AAF19609 from [Arabidopsis thaliana]
          Length = 354

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
 Frame = +3

Query: 333 PFKLDTEHPPTYNVNA-KTRLVS---GYENSRPININPRSITPSLNGTRGAYVIS 485
           P KL+ +HP   N+NA + R VS    ++  R I + PRS + S     G +VI+
Sbjct: 114 PIKLNIDHPLDKNLNALEFRRVSCKGVFDEQRSIYLGPRSRSISGITENGFFVIT 168


>At5g21080.1 68418.m02510 expressed protein predicted proteins -
           Arabidopsis thaliana; expression supported by MPSS
          Length = 980

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = +3

Query: 306 SKTNAVIIYPFKLDTEHPPTYNVNAKTRLVSGYENSRPININPRSITPSLNGT 464
           S++ +  I     D E P     +  +RL S Y  S+ +  NP S+    N +
Sbjct: 548 SRSTSKFIRGESFDDEEPKNNTSSVLSRLKSSYSRSQSVKRNPSSMVADQNSS 600


>At4g23300.1 68417.m03358 protein kinase family protein contains
           Pfam domain, PF00069: Protein kinase domain
          Length = 660

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +3

Query: 159 LKLICVIVVWLFTIVSPPMSTCN*NNIQHERQLYCPNGEHDNNIFFIMPSKTN 317
           L ++C I++  F + S    TC  N     R+ + PNG +D+N   I+ S  N
Sbjct: 7   LSILCFILL-AFGVASVSAQTCIEN-----RKYFTPNGTYDSNRRLILSSLPN 53


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,939,387
Number of Sequences: 28952
Number of extensions: 215617
Number of successful extensions: 600
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 600
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1043173136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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