Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120291.Seq
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 29 0.64
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 27 3.4
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 3.4
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ... 26 6.0
SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1 |Schizosaccharom... 26 6.0
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 26 6.0
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 7.9
SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|... 26 7.9
SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|c... 26 7.9
SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme... 26 7.9
>SPBC713.09 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 29.5 bits (63), Expect = 0.64
Identities = 18/71 (25%), Positives = 34/71 (47%)
Frame = -3
Query: 220 RASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDI 41
+A N +E ++ ND N N PT + VV ++E +ASN +++ + D
Sbjct: 24 QAKSKNSVAEDNVDRESNDGNNQVNEPTGNDNTQVVENTEDISASNVVSAEGAEASTGDA 83
Query: 40 MECLLKTTDNL 8
+T++N+
Sbjct: 84 STQSPETSENV 94
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 27.1 bits (57), Expect = 3.4
Identities = 14/43 (32%), Positives = 27/43 (62%)
Frame = +2
Query: 488 ERIRKQSPININLRSITPSLNGTRGAYVISCIRAPAFIEIYLH 616
+R+R +P IN+ SI+ +++G+ A + +C + A IY+H
Sbjct: 266 KRLRVLNPSKINISSISFNVDGSMLA-IATCAQEEAAGNIYVH 307
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 3.4
Identities = 13/25 (52%), Positives = 17/25 (68%)
Frame = -3
Query: 283 QPNDYDAN*FNASYTSAPTPSRASF 209
QP+ Y+ FNA+ APTPS A+F
Sbjct: 869 QPS-YEEESFNATVIHAPTPSTATF 892
>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 767
Score = 26.2 bits (55), Expect = 6.0
Identities = 12/22 (54%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -3
Query: 217 ASFDNGYSE-FCDKQQPNDYLN 155
AS+D+ E +CDK P DYLN
Sbjct: 348 ASYDSVDMETYCDKHTPPDYLN 369
>SPAC17G8.01c |trl1|SPAC6C3.10c|tRNA ligase Trl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 787
Score = 26.2 bits (55), Expect = 6.0
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Frame = +1
Query: 130 HPAWD----CYNNSNSRWAVVYHKTLNSRCRTTLGTAS 231
H WD C+ + + +V Y KT N + TLGT+S
Sbjct: 702 HLVWDDRVICFRVTMNENSVWYGKTCNPQLHITLGTSS 739
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 26.2 bits (55), Expect = 6.0
Identities = 21/100 (21%), Positives = 42/100 (42%)
Frame = -3
Query: 334 LNIVSVAS*HWRRHDREQPNDYDAN*FNASYTSAPTPSRASFDNGYSEFCDKQQPNDYLN 155
++IVS + R + E P YD + Y S+ ++ ++ + ++ N
Sbjct: 1 MSIVSSVAFVPRGYASEFPKSYDID--EIEYERINQLSKLKLEDARADLQSSMEDSNKAN 58
Query: 154 YYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDIME 35
T DGA+ V+ SE + ++++ DD + E
Sbjct: 59 GNGEETTDGAEGVLQTSEEVDDELKVYNLDTYDDDEEEAE 98
>SPAC4F10.09c |||ribosome biogenesis protein Noc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 860
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = +2
Query: 488 ERIRKQSPININLRSITPSLNGTRGAYVISCIRAPAF 598
E +RK++ N+N R I+ L G AY + + + F
Sbjct: 355 EDLRKEAEENVNSRVISAVLTGVNRAYPFAEVNSEKF 391
>SPCC4G3.18 |||conserved fungal family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 828
Score = 25.8 bits (54), Expect = 7.9
Identities = 10/40 (25%), Positives = 18/40 (45%)
Frame = +1
Query: 79 KSLKLLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLN 198
K ++ S ++ C + +WDC + WA + LN
Sbjct: 71 KDFRIRWSAIILIHCTISQSWDCLVEHGATWAKLLIALLN 110
>SPAC26A3.15c |nsp1||nucleoporin Nsp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 598
Score = 25.8 bits (54), Expect = 7.9
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 692 DKMCHTCSSACVRVTTNPNGAVY 624
DK +T SSA TTNP+G+ +
Sbjct: 119 DKSKNTASSATGAATTNPSGSTF 141
>SPBP4H10.05c |spe2||S-adenosylmethionine decarboxylase proenzyme
Spe2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 25.8 bits (54), Expect = 7.9
Identities = 16/47 (34%), Positives = 21/47 (44%)
Frame = +1
Query: 91 LLQSRCQILPCRLHPAWDCYNNSNSRWAVVYHKTLNSRCRTTLGTAS 231
L Q++C++L D Y S S V HK + C TT AS
Sbjct: 61 LAQAQCKVLSVVNSEEIDAYLLSESSMFVFAHKIILKTCGTTTLLAS 107
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,341,680
Number of Sequences: 5004
Number of extensions: 67898
Number of successful extensions: 188
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 183
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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