Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120291.Seq
         (864 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0080 - 22243175-22243226,22243342-22243389,22243485-222435...    29   3.6  
06_03_0860 + 25484826-25485758,25486155-25486406                       29   6.3  

>05_05_0080 -
           22243175-22243226,22243342-22243389,22243485-22243540,
           22243752-22243819,22244712-22244773,22245166-22245214,
           22245818-22245899,22245987-22246064,22246441-22246499,
           22246727-22246805,22246946-22247218
          Length = 301

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = -3

Query: 250 ASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLAS 71
           A   S+  P+  ++  G     +  QP+ YLN   +  P+G   +V D   A     +A+
Sbjct: 175 AENASSVLPATKTYHLGLRRDEETLQPSIYLNNLPDKIPEGTRVLVVDPMLATGGTIVAA 234

Query: 70  VNSLTD 53
           ++ L +
Sbjct: 235 IDLLVE 240


>06_03_0860 + 25484826-25485758,25486155-25486406
          Length = 394

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 16/43 (37%), Positives = 21/43 (48%)
 Frame = -3

Query: 601 DKGRRANAADHVRSSCPVQGRCYRPQINIYRRLFSYPLTKRVF 473
           D+ RRA   D   S      R Y P  NI +  F +P T++VF
Sbjct: 80  DEARRAVLEDQFNSEVAFLSRLYHP--NIVQVSFLFPYTRQVF 120


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,538,578
Number of Sequences: 37544
Number of extensions: 433403
Number of successful extensions: 1063
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1033
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1063
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)