Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120291.Seq
(864 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.13
SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.92
SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06) 31 1.6
SB_57707| Best HMM Match : Stig1 (HMM E-Value=2.7) 29 6.5
SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.5
SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_29297| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0) 28 8.5
SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07) 28 8.5
SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036) 28 8.5
SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_51002| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1888
Score = 34.3 bits (75), Expect = 0.13
Identities = 31/100 (31%), Positives = 42/100 (42%), Gaps = 6/100 (6%)
Frame = -3
Query: 292 DREQPNDYDAN*FN--ASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADT 119
D E +D D N N S + + + DN + D N+ +Y N+PT D T
Sbjct: 86 DNETTSDNDTNSDNDTTSDNDKTSDNDTTSDNDTTSDNDTTSDNNTTSY-NDPTSDNDTT 144
Query: 118 ----VVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDN 11
SD++T + N S N DND KTTDN
Sbjct: 145 SDNDTTSDNDTTS-DNETTSDNDTNSDNDTTSDNDKTTDN 183
Score = 32.3 bits (70), Expect = 0.52
Identities = 31/96 (32%), Positives = 41/96 (42%), Gaps = 2/96 (2%)
Frame = -3
Query: 292 DREQPNDYDAN*FN--ASYTSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNPTPDGADT 119
D E +D D N N S T + + DN + D N+ +Y N+ T D T
Sbjct: 158 DNETTSDNDTNSDNDTTSDNDKTTDNDTTTDNDTTSDNDTTSDNNTTSY-NDTTSDNNKT 216
Query: 118 VVSDSETAAASNFLASVNSLTDDNDIMECLLKTTDN 11
S++ T + N S N T DND KTTDN
Sbjct: 217 --SNNNTTS-DNDTTSDNDTTFDNDTTTDNNKTTDN 249
>SB_2813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1362
Score = 31.5 bits (68), Expect = 0.92
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 136 AWDCYNNSNSRWAVVYHKTLNSRCRTTLGTASE 234
AW YN + ++W VVY KT + R L E
Sbjct: 1207 AWKIYNETKNKWYVVYTKTAEQKERWRLAFTEE 1239
>SB_42044| Best HMM Match : ubiquitin (HMM E-Value=1.2e-06)
Length = 1425
Score = 30.7 bits (66), Expect = 1.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +1
Query: 124 RLHPAWDCYNNSNSRWAVVYHKTL 195
RLH W C ++ S A++YH TL
Sbjct: 800 RLHHTWSCLHHQYSSSAIMYHSTL 823
>SB_57707| Best HMM Match : Stig1 (HMM E-Value=2.7)
Length = 159
Score = 28.7 bits (61), Expect = 6.5
Identities = 29/137 (21%), Positives = 57/137 (41%), Gaps = 1/137 (0%)
Frame = -3
Query: 421 MITALVLEGIIKKILLSCSPLGQYKLTFMLNIVSVAS*HWRRHDREQPNDYDAN*FNASY 242
M+ +V+ ++ +++S LG+ L ++ + W+ ++ N D N N Y
Sbjct: 15 MMVVVVMMMMMIMMVVSMVVLGESGLKHSGDVQANNQRGWQVSSKDSSNQCDGNLANVFY 74
Query: 241 TSAPTPSRASFDNGYSEFCDKQQPNDYLNYYNNP-TPDGADTVVSDSETAAASNFLASVN 65
S+ P + FC ++Q Y+N+ PD E + + S N
Sbjct: 75 KSSKRPVSSILGEKTEGFCARRQ-----CYHNSQCKPDFMCRYPGMCE--PSPGYCISPN 127
Query: 64 SLTDDNDIMECLLKTTD 14
S + N E +++TT+
Sbjct: 128 SCGETNAASELIIRTTE 144
>SB_40095| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 789
Score = 28.7 bits (61), Expect = 6.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = -2
Query: 710 SKVLRTDKMCHTCSSACVRVTTNPNGAVYLLYVNKS 603
S++L T ++ T S V+++PN +V LLY K+
Sbjct: 278 SEILHTSQIYETISINVTAVSSSPNASVSLLYETKA 313
>SB_54030| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 460
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -3
Query: 208 DNGYSEFCDKQQPNDYLNYYNNPTPDGADTVVSDSETAAASNFLASVNSLTDDNDI 41
DN ++ D ND +N N+ D D ++D N + N + DDND+
Sbjct: 52 DNDMNDDNDMNDDND-MNDDNDMNDDNDDNDMNDDNDMNDDNDMNDDNDMNDDNDM 106
>SB_29297| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 166
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 184 HKTLNSRCRTTLGTASEHWCTTR*INLRHSRLVVHDR 294
HK SR R T T+SEH TR NL +H R
Sbjct: 39 HKEYASRTRVT-HTSSEHAFRTRFTNLHQGHAFIHSR 74
>SB_25851| Best HMM Match : Laminin_G_2 (HMM E-Value=0)
Length = 683
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -3
Query: 307 HWRRHDREQPNDYDAN*FNASYTSAPTPSR--ASFDNGYSEFCDKQQPNDYLNYYNNPTP 134
H R R+ ++ S+ + S+ A DNG C ++ D + + PTP
Sbjct: 546 HKSRRTRKTTPQPTTQYYSTSHDPMTSQSKKTACGDNG----CTTEETMDTMGFIIPPTP 601
Query: 133 DGADTVVSDSETAAAS 86
G V SD AAS
Sbjct: 602 TGGHNVTSDKPVMAAS 617
>SB_38795| Best HMM Match : M (HMM E-Value=2.4e-07)
Length = 1447
Score = 28.3 bits (60), Expect = 8.5
Identities = 11/37 (29%), Positives = 26/37 (70%)
Frame = -3
Query: 124 DTVVSDSETAAASNFLASVNSLTDDNDIMECLLKTTD 14
+ ++++ +T++ + +N+LTD+N+ ++ LKTTD
Sbjct: 597 ENLLTEGKTSS-QKLQSKINTLTDENNSLKVRLKTTD 632
>SB_29912| Best HMM Match : Exo_endo_phos (HMM E-Value=0.00036)
Length = 618
Score = 28.3 bits (60), Expect = 8.5
Identities = 9/14 (64%), Positives = 13/14 (92%)
Frame = -3
Query: 571 HVRSSCPVQGRCYR 530
H+ SSCPV+GRC++
Sbjct: 88 HLISSCPVRGRCFK 101
>SB_3353| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 28.3 bits (60), Expect = 8.5
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Frame = -3
Query: 307 HWRRHDREQPNDYDAN*FNASYTSAPTPSR--ASFDNGYSEFCDKQQPNDYLNYYNNPTP 134
H R R+ ++ S+ + S+ A DNG C ++ D + + PTP
Sbjct: 183 HKSRRTRKTTPQPTTQYYSTSHDPMTSQSKKTACGDNG----CTTEETMDTMGFIIPPTP 238
Query: 133 DGADTVVSDSETAAAS 86
G V SD AAS
Sbjct: 239 TGGHNVTSDKPVMAAS 254
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,998,152
Number of Sequences: 59808
Number of extensions: 549885
Number of successful extensions: 1482
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1297
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2467263854
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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